Special

ENSG00000132692 @ hg38

Biotype
protein_coding
Gene Symbol
BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr1:156641390-156659532:+
Assembly
hg38
Other assemblies
hg19

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
4.31
100
0
Alternative 3'ss
306
chr1:156646801-156647106
+
95.66
100
0
Alternative 5'ss
0
NA
+
29.12
43.59
0
Alternative 5'ss
4
chr1:156642272-156642275
+
70.88
43.59
0
Exon Skipping
145
chr1:156658127-156658271
+
91.82
45.66
0
Exon Skipping
175
chr1:156647508-156647682
+
92.96
100
0
Intron Retention
578
chr1:156657097-156657674
+
6.4
100
0
Intron Retention
271
chr1:156658272-156658542
+
5.2
100
0
Intron Retention
293
chr1:156658734-156659026
+
5
100
0
Intron Retention
3771
chr1:156642276-156646046
+
28.76
100
0
Intron Retention
655
chr1:156646146-156646800
+
39.31
100
0
Intron Retention
3389
chr1:156652893-156656281
+
31.67
91.41
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000004892 Bcan 1-to-1
Mouse mm9 ENSMUSG00000004892 Bcan 1-to-1
Rat rn6 ENSRNOG00000018798 Bcan 1-to-1
Cow bosTau6 ENSBTAG00000015789 BCAN 1-to-1
Chicken galGal4 ENSGALG00000013237 BCAN 1-to-1
Chicken galGal3 ENSGALG00000013237 BCAN 1-to-1
Zebrafish danRer10 ENSDARG00000099412 bcan 1-to-1
Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"