HsaINT0017004 @ hg38
Intron Retention
Gene
ENSG00000132692 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr1:156658543-156659528:+
Coord C1 exon
chr1:156658543-156658733
Coord A exon
chr1:156658734-156659026
Coord C2 exon
chr1:156659027-156659528
Length
293 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TGAGTGTGTGTCTTCCCCAGGCC
3' ss Score
10.68
Exon sequences
Seq C1 exon
TGTCCTGTGGGCCGCCACCGGAGCTGCCCCTGGCTCAAGTGTTCGGCCGCCCACGGCTGCGCTATGAGGTGGACACTGTGCTTCGCTACCGGTGCCGGGAAGGACTGGCCCAGCGCAATCTGCCGCTGATCCGATGCCAAGAGAACGGTCGTTGGGAGGCCCCCCAGATCTCCTGTGTGCCCAGAAGACCT
Seq A exon
GTGAGTGCCAGGAAGAGGCAGGTGGGAGTGGGAGACAGTAGCCAACAGTAGCCTTGGACTCCACTTAAAGTCCTGCCTGTCACTGGCCATGTGACCTTGGAGCCATCACTGCCCCTCTCTGAGGCAAAGGGGAAGAGGTGGGCTGGAGGCTCTGGGGTTCCTTCAGTGCTGATGTCTGATAACATGCAGCCCCATTCTGGGCTCTTACGGGCTGAGCAAGAACATCAGAGGGCAGGCTCTGAGGAGAGGAGAAGGAAGAGCCAGGGTGGAGGGTGAGTGTGTGTCTTCCCCAG
Seq C2 exon
GCCCGAGCTCTGCACCCAGAGGAGGACCCAGAAGGACGTCAGGGGAGGCTACTGGGACGCTGGAAGGCGCTGTTGATCCCCCCTTCCAGCCCCATGCCAGGTCCCTAGGGGGCAAGGCCTTGAACACTGCCGGCCACAGCACTGCCCTGTCACCCAAATTTTCCCTCACACCCTGCGCTCCCGCCACCACAGGAAGTGACAACATGACGAGGGGTGGTACTGGAGTCCAGGTGACAGTTCCTGAAGGGGCTTCTGGGAAATACCTAGGAGGCTCCAGCCCAGCCCAGGCCCTCTCCCCCTACCCTGGGCACCAGATCTTCCATCAGGGCCGGAGTAAATCCCTAAGTGCCTCAACTGCCCTCTCCCTGGCAGCCATCTTGTCCCCTCTATTCCTCTAGGGAGCACTGTGCCCACTCTTTCTGGGTTTTCCAAGGGAATGGGCTTGCAGGATGGAGTGTCTGTAAAATCAACAGGAAATAAAACTGTGTATGAGCCCAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132692:ENST00000329117:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.514
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=89.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGAGGTGGACACTGTGC
R:
CGCAGGGTGTGAGGGAAAATT
Band lengths:
308-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development