DreINT0037001 @ danRer10
Intron Retention
Gene
ENSDARG00000099412 | bcan
Description
brevican [Source:ZFIN;Acc:ZDB-GENE-030131-6045]
Coordinates
chr16:29375522-29379323:-
Coord C1 exon
chr16:29379138-29379323
Coord A exon
chr16:29377106-29379137
Coord C2 exon
chr16:29375522-29377105
Length
2032 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
TTCACATGTTTTGTTTCCAGCGG
3' ss Score
9.12
Exon sequences
Seq C1 exon
CAGCATTCTGTGGCCAGCCCCCTCTTGTGCTGCATGCTAAGATGTTTGGACGCCGTCAGTTAAAGTACAGGGCGAATTCACAGGTGCGCTACTACTGTGAGTCAGGCTTCATTCAGAGACAGAACCCTATCATCACCTGTCAGAGCAATGGACTATGGGAGGAACCCAAAATCATGTGTTCACCAG
Seq A exon
GTGAAAAATAGTATTTTGAATATTATACACTCAAAAGCAGTGGTCTCAAACTTAATTCCTGGAGGGCCACAGCTCTGCATAGTTTAGCTCCAACCATCTCCAAACTCACACCTGCTAAATAGTCTCCAGTAGTCTTGAACACCTTGATTAGTTGGATCAGCTGTTTGATTAGCAATGCGGTACGAGCAAAACTGTGCAGAGCTGCAGCCTTCCAGTAATCGAGTTTGAGACCTGCTCAACAAGCGGTGGTGTTTAAGCAATGGTCAGTTTGTTCTACAGTAAGTACAAAGAAAATATTCCCCATGTCATTACACCACCAACTCCAGTTTGAACTGTTGATAAAAAGACATTTAGTGGATTCATGCTTTGGTGTTGTTTACACCAAATTCTCTAATCATGCAAATGTTGCAGCAAAAATTGAGACTCATCAGACCAGGCAAACCTTTTCCAATGTTTTGCCATCCAACTTGTCAAATTGAAGCCTTGATTTTGGTGTTAATAGCTGACAGGAGTGTCACCAATCTGCTCTTCTGCTGCTGTAGCTCATCTGCTTCAAGGTTTAATGTGTTGTGCTTTGAAAAGCTGGGTTTCCATCACCCTCAGTTAGGCCCAATCCCAATTCTACCCCTTAGCCCTGTGTCGATTCTCATATGCTATGAGGTGTAGGGTAAGGTAAATAAATACTTTACAGGACCACAGTATAAACAATGAAGTATGCGAAATATCCCTGAATACATCAGCTACAGCAGCAACATGGCTGCAAAAGTGAGCAAGCAGATGCACAAATGTAGAAATATTGCCATTAATAAGGATTTTTTACTACAAGCATATGATTTAATACATTTATAAGAGCATTGATGTGTGACAGTCATGATCTTCAAAGACATTCTTTTTTTTTCTTTTGAGACATTAGATCGAGGTCCTGACTCTGTGTGGTAATTAAAAATCCCATGGCGCTTCTCGTAAAGAGTAGGGGTGTAACCCTGATGTCCTGGCCAAATTCCCCATTATTGGCCCTTTACCTATCAAGACCTCCTAATCATCCCCATCCCTATCCTCCAGTATGTGGTGAGCACACTGGCATCGTTGCATCCATTGCATCATCCGAGTGGATGCTACACACTGGTGGTGGTGTGGAGAGACCCCAACCCCCCCCCCCATGATTGTGAAGTGCTTTGGGTATATGGCCAATTACTAATTCTCATTTGGGATTTTATCTTTTTTTATGAGATTCACTTCACGTTAAGCCTCATTCACACTATAAGCAACTCGCAGCAGCAAGCGAGCGTTCATTTCAAAGGAGAGCGAGCAACCTCTGTCTACACAAGTGACAGCGACTGTTGGCGAACAAGTGGGCATGTCGAACAAAGCGAGAAATTTGAGAATCCTTTAACTTTATGCAATTAGAGAGCAACTTTCTTGAGCTCACATGATCTTTCAGCTCGCTCGGAGGCCAGTTGTATTCGTGCTATAGATCTACACAGACCTGCCTTTGAAGCAGGTCACCACTCAGAGCAACAGGCAGCTACAAAGTCGCTGCTAGTATAAATGAAGCATTGGGATGGAAACCCAGCTAAAGATCCTCTTTTGTAACTCTCATTTATAGCATTTATGGCCTTTCTATCAGCTTTTTGACCTCTGGCATCAACAAGGCCTTTTGCCATAAAAAAATTTCCACTCACCTCAATTTTTTCTAAACCATTCTATTTTAAAATCTAGATATAAATCCCAATAAATCAACAGTTTCTAAAACACTCCACCAACAACTATGCCAAGTCATTCATATCACCTTTTTTCCTTAAAATGATGCTTAGTTTAAACTTCAGCAGATCATCTACATGTCTAAATGCATTGAGCTGCTTCAATATGATTGGCTGATTAGCAGTAACCTGCAGTTCAATGGGTTGTGTGTTAAATGATATTGTCATCTTTTACGTTTTACACATTACAGTTGAATATTTGCTACAAAAATATTTATTGAGCCATTGAATTTACCATGTTACCATGTTATTTTCACATGTTTTGTTTCCAG
Seq C2 exon
CGGGACCAACATATTCAAATGGAGACCTGGTAACATGGCGCACAGGTCAGAACAAGGAAATAGTCATAGAAGACTCAACAACAAAAACACCTGAATATTTGGATATAAAATGGAACTTTTAAAACAAGCACACTGCATAGTTGCATTACATGCCTTTGTTTATCATGTCATCCTTAAAGACGTCCACGCATCCAAATTCTTTATATAACATCAGTGTTGCATTAGGAATCAGTCCTGCTTAACTTTTATTCTCAACCGTTAATTCCAATTGGAAAACAGTTTAAGTACTGTAAACATTTCTTATAAAACTAAAGCATCATTAATGTCCATTTTCTTCGTCCATCTCGCTTCTGCCCCATTTGTCTCTGTGTACACCATGACACTGAATTACATTTGGTAATTCTAAGATAAAGCACACTTGATTAAAAGCAGCATCCAAACAAAGCTTGTAACCGTTGGACTAGACACCTATTCTGTTTGTTTGTTTTGTTTTTAATAAATTTTAGTTAAAACTATGGACAAACGCTCTCTAACATCAGCTGGCCTGAATCCTATTGTTTCACATCGTTGCTCTGTTGACTAAATAATCCAAGTTTTAAAAACAAATAATAACTTGACTTCTATTTGATCATTTGATATTAGAAGTGGCTTATATGAAAGGCAAAGGCCGCTAGATTACGCTTATTACCTCAGTCATGCTCAATAATGTTCATGTCTGGTGACCTGGCTGGCCAATCCTGGAACACCTTAGCCTTCTTTACTTTCAGGAAGTATTTTAATTTGTTACTTTCTAAACTGATTTCTTGGGTCCCGGCAGGTTTTAATAGGTCTTTTGCGGTATTTGTTATGATTGGGGTGTAGTTCAACAGATAATTCATAGAAAAAATCTACCTTCTGCCACTTTTACAAATTATCACCTAGAAGTCAAATGTGTTGCTCTTACAACTGTGATAGACGACAAGACTTTTGTCAGGTCCATCATCGGCTACATTACATATCTGTTCTTAAACTTTCACCTTTTCCTTACTTACAAATTGTCTGCCAAACAAGACTCAATGCAAGAGCGTACAGACTAACAGTGCAATAAGGTTGTCCTAAACTGTAGATGTAACTTTAAAAACTGCAATATTCTTGCTGCTTCTTTTAGAATATTCAAGTCGAACAATTGTCAACTTACTAAAAATGATTTGTAACCTTTGTAAACCCTCCAATCAAGTCAGCTGAGGTATGTCGACCCATCCATTGTGTTGATGTTGGTTCAGCAAAGCTTTATGAAGCAGGGAAGATACTTTATGCAATCCACACTTGTGATTTCCAGACCCATATTGAGTCTTATGGGGGAGGACACTGGTCATTCTGCAACTTGGTGCTCAGTTTTTCAGGTCTGTATTGTACTCTGGAGGATGGCCATTTTAGTAGACTGTTATCAGAACTTTTGTTAAGAGATGCATCACTAACAAAATTATATTTTCAGTTTTGATGGCCTAAAACCATCACATATTTTATCACCCTTGAGAAACATTAAGTGAATTACATTCCAAGCAAGCAGAGCATTCACAATAAATAAATTGATCACAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099412:ENSDART00000162835:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]