HsaINT1005083 @ hg38
Intron Retention
Gene
ENSG00000132692 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr1:156652248-156656389:+
Coord C1 exon
chr1:156652248-156652892
Coord A exon
chr1:156652893-156656281
Coord C2 exon
chr1:156656282-156656389
Length
3389 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CACTTCTTTCCCCCTCTCAGGTG
3' ss Score
10.66
Exon sequences
Seq C1 exon
AATTTGAAACACAATCCATGGTACCGCCCACGGGGTTCTCAGAAGAGGAAGGTAAGGCATTGGAGGAAGAAGAGAAATATGAAGATGAAGAAGAGAAAGAGGAGGAAGAAGAAGAGGAGGAGGTGGAGGATGAGGCTCTGTGGGCATGGCCCAGCGAGCTCAGCAGCCCGGGCCCTGAGGCCTCTCTCCCCACTGAGCCAGCAGCCCAGGAGGAGTCACTCTCCCAGGCGCCAGCAAGGGCAGTCCTGCAGCCTGGTGCATCACCACTTCCTGATGGAGAGTCAGAAGCTTCCAGGCCTCCAAGGGTCCATGGACCACCTACTGAGACTCTGCCCACTCCCAGGGAGAGGAACCTAGCATCCCCATCACCTTCCACTCTGGTTGAGGCAAGAGAGGTGGGGGAGGCAACTGGTGGTCCTGAGCTATCTGGGGTCCCTCGAGGAGAGAGCGAGGAGACAGGAAGCTCCGAGGGTGCCCCTTCCCTGCTTCCAGCCACACGGGCCCCTGAGGGTACCAGGGAGCTGGAGGCCCCCTCTGAAGATAATTCTGGAAGAACTGCCCCAGCAGGGACCTCAGTGCAGGCCCAGCCAGTGCTGCCCACTGACAGCGCCAGCCGAGGTGGAGTGGCCGTGGTCCCCGCATCAG
Seq A exon
GTAATTCTGCCCAAGGCTCAACTGCCCTCTCTATCCTACTCCTTTTCTTCCCCCTGCAGCTCTGGGTCACCTGACCTGTAGTCCTTTAACCCACCATCATCCCAAACTCTCCTGTCCTTTGCCTTCATTCTCTTACCCACCTCTACCTATGGGTCTCCAATCTCGGATATCCACCTTGTGGGTATCTCAGCTCTCCGCGTCTTTACCCTGTGATCCCAGCCCCGCCACTGACCATCTGTGACCCTTCCCTGCCATTGGGCCCTCCACCTGTGGCTCACATCTCGCCAGCCCCACAGAGCATCCTCAGGCCTCTCCAAGGGTCCTCATCACCTATTGCAGCCTTCAGGGCTCGGCCTATTTTCCACTACTCCCTTCATCCGCCTGTGTGCCGTCCCCTTTAGCTGCCTCCTATTGATCTCAGGGAAGCCTGGGAGTCCCTTCTCACCCCTCAACCTCCGGAGTCCAGGAGAACCCGTACCCCCACAGAGCCTTAAGCAACTACTTCTGTGAAGTATTTTTTGACTGTTTCATGGAAAACAAGCCTTGGAAATAAATCTCTATTAAACCGCTTTGTAACCAAGCTCTGGTACCCTCTGTCTCCATCTCCTGCTGTCCACCTCTCTCATTCCATGGGTCTGTGTCATGGGGAGCACTTGGATGCTTCTTCTCTGGCTCCATGTCTCTCCCTGTCTCTGTGTGTGTCTTGGCCTCTCTTCCTTTTTCATTTTCGGCTTCTCCCCTTGTCTGTCCTGGCAGTCTAACAGCCCCTCATTGTTCCCCCAGCCTCTCCTTCTCAGGCCTGTCTACACTTTCCTTCCTGGCTGCTAAGATCCCAAAATTTGACTGTACACATTACCCCTGGAGAAGTCATCATCCATAGTCTGAGGCAGTGCTGGGAGTTGTAGTCCCTCACTCCTGATGAGGAGAAACCCCTGCAGCCCGGAGTGCATGTGTTGTGCATTTATATTCACTTCCAATCCATCTTGGTGGTGCCAAGGGTCATAGTAACTGAGGGAACTGAGGGTCTCTCAGCATAGAGGCAGTTCCCTGGCATTCAGTTGCCCTCACCCCCATCCCCTAGCCCTGCATCTCAGCAGGGGGTGGTATCTAACTCTCATCCCACTACCTACAACTTCCGTCTTCTCCACTAACTCCTGCACTAATGATCATTCCCTACTCTCCAGAAGGAATGGCTTCACCCTCCCCAGACCCAAAGGGTCTCAAAGTACCTAATGCTGGAGAAGACACTGATCAAAAGCAAGTGATGGAGAGTGTGAAGGAAGGAATCAGGTTCTGGGGTCTGAGAGAAGCCCTCTCTACTCAGGAAGGCTAAGATTCCCAGTGGAGGTTCCTGGAGAAGGCTGGGATTCCCTTAGCCCTAGGACCCCCATGTTAGATGGATCACATCCTGAGTCCCACCCAGGCTTACCCATGTCAACTGTTAGGTCCCTGCACAACTGGCCTTGGAGTTCAGCCCTGTGGGGGATAGGGAGGGGGTTTGGTGGGAAGAGGAGCACAATTGGAGGTATCTACAGTGTCTTAGTTTCCCCACCGGGAGGGTAAGTGAGAGGTCTCCTTGGCTGCTGTTTCAATGGAAAGAAAGGGAAAACTTTCTGGTTGTGTAGAATAGTTGTCCCCAAAAAGGGAGAGGGAAAATGACAAGAAGAAGAGTTCTTCACCCGACTCTGCCTGCGCTGGGTTCAGGTTCTGTAGCCCACAGCCAGGGGGAGGGGCCTATGGCTTGGGTAGGGGACCAAAGACCAAGTTTGAGAGCCTCTGTCCCCCAGGGTTGGAGGGTTGAATGGGAAGGAGCAGAAAGGACAACAGGAGGGACAGGAAAGTGTGAGGAGTGGGAGGGGAGTTCAGAATTCTACCCTCTGTGGGGCCTGGTGCTTAATGGGTTAAATGAAATACCTCTTCCTCTGGGGTTGGGAGGTGGGCAGCACCACAAGCTGGGAAGAAACTATTGGCAGGAGGGAAGATGACAGAAGGAGTGCTGCTGGAAAAGCTGATTCATTTCACCCAAAACAGCTAGGTCATCCCAGCAAAATTCTTTGAATCCACTCCAGCTTCTCCTCTCTCCACCCCTACTGATTCCCACCAGGCAGTGGGACCTGTGGCCAGGCCAGCGGGAAGCACTGTGGACCTTGGCCATGGCTTCTAGAGGTGGATGGTAAAGTCTGAAGGGTTCTGCCCTGGAGTGGTTTTGCCTCTCATGGCTGAGGGCCTTGACCTTACCATGGCTGAGGGCCATGACCTACACAGTTGGTCTGTGGAGCCATCTTCCTTTGGGTCATCTGAACCAGAAAGGATTGGAAACTGACAGCTCCTGTAGCACCCAAGCACATCCTAAGGACAGCCACCTCCTACCCCAGGATACAGAGAGAAAAAGTCCAGTAAAGCAGATGGCCTAGCCAGATGGAGCTAGATCCAGGCAACAGATTGCAGACCTTCAGGGCAGTGTGTTAGTCTAAGAGGACTGCCTGGAGGAGAGGGAGCCAGAAGGAGGGATTGAGATGGATTCTAGGTTGGAGAACCTGCAGAAGGCCCAAAGTGGAGTTGGGAGAGGGAGCCTGGTAAGTGGAAGAGTCTGTGGATATAAGAAGGGGAAGTGAGAGGTTGGGTGATATTGAGAGAAAGCTGCATGTGTGAGGCCAGTCAGCACTGCAGGACAATGGGAGCTGCTGCGACTTAGTTCCTAAGCTGGGGGAGAAGGGGCAGGGCCTAGAGTGAGGAAAGTGGGCTGGATCTCCACTAACCACTTCTGGGACTGGCTGACTGCCCAGTGGACAGCAGGAGGAATGGTTAGTATTCACCTGGACCACACCAATATCAGGTCTCAGGAGCAGTCAAGGGATACCACCCTCCACTGTTGCTGCGGTAATCCTTCTGTCCCCTCCTTCACTTCCATTCATTCCACCTGGACTATACAGAACTGTGCTGGGACCTGGCACAAAGACAAGGGGGTGTGGCACTAAACTCCAAGCCTAGAGAAGGAAAATGACCTGCCCAATATCACACAGAAGCCAGATAAGAGTTTAGAGCTATAACTTTCTGTGCCCAGTATCTTTCTCCATTGTGGGGCTGGGTTCTCAGGGCTCTCCTAGCCTCTTCTCCCCAGCCCCTTTTGGGCTGGGCTCACACTGGTGGCCATAACAATGGAAGGCTGAGCCAATGCTGAAGTCGGGAGCGGGAAGAGGAAAGAAACCCAGAACTCAGGGCTGGGTTGTGACCAGAGACAGGCTCTAGGGAGAACTTTTAGGGTGCTGTTATAGCTTCCAGGACAGAGAGACCAGGGCTGGGGGACCCTCTGCACCCTCTCCTGGAGGGCTCAGGCTGCAGAGTGCGGCTGCCTCGCTCCCCCCGCCTCACTTCTTTCCCCCTCTCAG
Seq C2 exon
GTGACTGTGTCCCCAGCCCCTGCCACAATGGTGGGACATGCTTGGAGGAGGAGGAAGGGGTCCGCTGCCTATGTCTGCCTGGCTATGGGGGGGACCTGTGCGATGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132692:ENST00000329117:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=83.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains