GgaINT0139608 @ galGal3
Intron Retention
Gene
ENSGALG00000013237 | BCAN
Description
NA
Coordinates
chr25:892928-893147:+
Coord C1 exon
chr25:892928-893012
Coord A exon
chr25:893013-893039
Coord C2 exon
chr25:893040-893147
Length
27 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGC
5' ss Score
3.29
3' ss Seq
GGGCTGCCCATGCCTTGCAGGTG
3' ss Score
8.21
Exon sequences
Seq C1 exon
GAAGATGGGATGGCTCCAGCCGTGCCACCGTGCCCCAGATGCTGTGCATCCATCCGAGGGCTGAGGGGCAGCTCGGGGGCGTGCA
Seq A exon
GTGAGCAGGGCTGCCCATGCCTTGCAG
Seq C2 exon
GTGGCTGCATCCCCAACCCCTGCCTGAACGGAGGGACCTGCATTGAGGATGGCACCCATCCCACCTGCCTCTGCCTGCCAGGCTATGGAGGGAGCAGCTGCGAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013237:ENSGALT00000021615:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATGGGATGGCTCCAGC
R:
ATGCAGGTCCCTCCGTTCAG
Band lengths:
128-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]