DreINT0037008 @ danRer10
Intron Retention
Gene
ENSDARG00000099412 | bcan
Description
brevican [Source:ZFIN;Acc:ZDB-GENE-030131-6045]
Coordinates
chr16:29382880-29386899:-
Coord C1 exon
chr16:29386000-29386899
Coord A exon
chr16:29382988-29385999
Coord C2 exon
chr16:29382880-29382987
Length
3012 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
ACCACATGAATGTTTTTTAGACG
3' ss Score
5.83
Exon sequences
Seq C1 exon
CTGATGATGTTACTGATCATTTCACTTTGAGCACAACACTGAGGGAAACTGAACTGTCTGAAAGCTCTGGAGATCATGATGAGGTCCTGCCTGTCATACTCTTCACCACACCTATGCCTCATCTGCTGGACTCCTTAACCACACGTGCACCTGTACAGCTGGAAATCAGTTCTCCACAGCAAATTGAAGGAGTTCTCTCTGACAGCACCACTGCATCTGCCCTCAGAGTTGTGGAAGAAGAAGTGGAAAAGGTGGAGCAAGAAGAGCTTGGGGAACAACCTGAAACCAAAATCACCACATCCACTGAGCTTAATCATTCTACTGTAACTCTGAGCATTGATGGCAGTGATGAAGAGGAATCTTCAGGAGAACCTTCAGAAAACTGGACCTCGGTAACTGAAAACCCTTACTCGAACACAGCCACCATCACTCCTTCTAATCTAACAGATCTGCAAGAGCACAACGAAACCAATAGCGATGATGAAGATAATCAGGCCATCACTGTGGAACCCACAACGGATCTGGAGGTTACTTTTCTTCCTCATGGGACTCAGACCTCCATCTGGCAGAGCGTGGTGACAAGCCCTGGAGAGTTGAACGCAGATGTTGAGTTCAGTGGAGAAGCAGCACTGACCACAGATGACATGAGAGCATTAGAGGAATCTGAATCCACCAATGCACCTATCAGTGAGCAGACTGAGGAAACTCTAAAACCATCCAGCACGACAGACCATAATGATGCTGACGATGATGATAATGATAATGATGATGATGAACTCATAACTAAAGCAATAACAGGCAATGAAGAAGATGAGAATGATGTCAAAACCACACACGAGTCCTTCATTATACCTGTCAGACCTACACAGAGAGTGTTGATCAGGACAAGCTACATTTCAG
Seq A exon
GTAAAAACAACAATAACTGTGTAATATAGTGGTAGGGCTGCACAATATACTGTTTCAGCATTGATAACACAACGTGCGATTCTGCAAAAGGCATTGCAGGATGTGTATCAGTTTACATTTTCAATTGAATTAATACCATTCGGACTCCATAATTTTTAAAATATAAATCTCTAAAGGTTCAAAAATTCCTTAAGTATTTTTTTTTTGTTGTTGAGATTTTAACAGATTTGTTGAGCATCAGTTAAGACAATGTAAGCACCTGTCAGCTTTAATTGTGGGGAAAATTGGATAATTTTGAGCTTTTGTCAGCTAATTTCATCTTCCGGGTTTAAAAAAAAATCGGGGCAGGATCAAAATCAGTGACCTAGCATGAATCTGCTAGTCTAGTGATGACACATCGGTTTCTCATTATAATTCATAGTAAAGTTTTCTTATTCTATGAGAAGACCCTGTTTCTTAATTATTCATGAGAGCACATGATTTCCAAGGCAAGGCAGACCTGCCAAGCTGTGATACCTCGCACGGCACGCAGTATTTAGCCATTTACAGTATGAAGGGTCGCATGTGTTTTTTTCCATGATCCACTGGGTTTGTTGCATATTTTTCACCGTGATGCTTTCAGGGCCAATACAGCAAAGCTGTTGGTTTGCAGCAAGCATTTTTGGCGGGAGAGCTGTATGAGCATTGGAGAACGGGGGACTTTTTTCAGTTGAGTTGTTGCCCTACAGACACGTCACCTATTTCCGTGGTGCTCTGTTCGCCTATGTTTAAATCCTCTGAGTTACCGGCAGGGCTAATGGTTGGTGTAGAAAGGGCAAGAGACCTGCTGCACTGATATCCACTGTGTTTACATTCAGACCCGGGAATTGAGGAGGAGAGAAGTCCTCCTCATTTATAGTGTTTATATAAACATGGTTATCTTTATAATTATATAACAAATTGTGTTTGTGTGTATATGAAATGACGAATAACAAATGTAGCAGGGAATTAAATTACTGACTGCTTATTTCTTTGCATTTTAACTTTGTAAACTATAAAAGCATGGGTGGTCTTATGGTTTGTGTCCTATTTTGTTATTCAACTGACAGTTGTTCGGTCCCCTTTTTTCCCCCTGCTCTGCCAGCCACACACACTCCTCCCTCTGATCGCAGCACTCCACGCCCATCGTGTAGCATTTTTTGAAAAAGTTCTGAGGTAGACTGAAATAGGGGGCTTTCATGACCCTTTACCAAAGATTAATTGTGTTTATTTATTCCAATGAAGACTGTAGAATGTTATTTTACATTGATTATTGAGTTTCTGTCAATGCTGTTAGACTCCACTGAAAACCATAAAGGGCTGTTTGTTTATTTTTAATCTTTGCTCTGTTGTTTTCATTTGTGCTTTAATTTATTTTATATATTCCTTTTTATAGTTTTGAACATTTTATGCAGATTCAGACCCCTAAAAATATCATCCCGATCAATGCAAAATTCTGAATTGTTTCCAAATAGAGTCATCTTATGAAATCATATTCGCAAATATAACATATTCACAATATATAAATCGCAGGAAAACACAATGTTGCAATGTCAGTTTTTTTCCAGTATTGAGCAGCCCTAGTATGTGGTTAGGTTTTCATTCCGTGGAAAGTTTATAAAGTCATTGAAGCCTTTAAAATTCATTTAATAAAGTTAAATGTTGGTGTAGATATCATTAGCAACAACTGGGAGTGCCTTGTGGTACTGTGGGAAACATAAAGTTATATTAATGCACACATTTAAAGGGGGGATTTTTTATATTTTTCATTGACATTTATTGGTCATGGCAGGTCTAAATTGGTTTACTTTTATAGTTAAAACCATAAAATAAAAAATATATTCCTTGAAATATATATGAGCTGAACATTTACCTAACTAGTGTAACAGTAATACCTGACTAGCTAGTTATCTGGCTAGAGTAGTGTCTAAAATGATATAAACATGATTAAGATAATAAAGAGACCACTTGAAAATAAATAATTATTATCAAATCATCAAAACGTTTTTGTTTTGTAAGGTACTGATGTAGTTTAATCCAAATTCAAAACAAAAATATTGTAATTTAGAACATTTAAACATAAAACAAATATTTTTACCATGTTTTCATTCATTAATATTGATTTTTAGATGAGACTTTTTTTTAACTTCAGAGGAGTTTAGTAATCAATATTTGATAAAAGGATTCTGATTTATAGTCACAACAAATAAAAAAAAATTATTCTAACAAAGAAAAAACTCTCTAATGAGTATTTGTATTTGACTTTACATACACCATTGCTTTACTTCTCAGTTTTGTTTTTTTGTATGTCAGTTTATTCTTTAGCTTGTTATTTCAGTTATTTATTTACTAAATGTAATAACAGTCTTATTTTATTTTATTCATATTCTTTATTTCATTTATTTATTTTTTTATAAATTCAGTTTTATCCAAATTACGATTAAATTGTTTTGTTTCAGACATGATTTTTGTAGTATTCTGGTGTGATAGCCTCCTCTGTTGGTTGTTAAAAATTACTTGTGGAAACCGTAAGATCTCAAAAGAGGGCGCTGTTTTCTTCTAAACGCTGGCAGTTGCATCTCTTTAAAATACCTGCAAACTAGATATCTGACATGTATAATCTGTAACCTCTGATTACCATGTTTATCAAAGACTGCAGTGCAGACAGATAGAGATCATTTATCAAAGGTGTGCAACCCACACCACAACAAATACTTCCAGTGGTGCATGAAGGAGAATTTTGGTTTAGTGGGGCCAAGATGACTAGAAACTGATAACAGAACAATAATGAAATGTTTTAAGGTAGAGATCTACAGTACCAATCACGAAGCCGGTTTTAGCCTGTCATTTAAGTGGTGCAGAAGTTGTAGGATTACTCACATTAAATTTGTAATAGTGCCACCTTGTGTTTAACTCATGCTTGATTTAAACCCCTCATTAATGTGTGCAACATATGTTTAGCTTCAGCTCTAATACCACATGAATGTTTTTTAG
Seq C2 exon
ACGCATGTTTGGAAAACCCTTGCAAAAATGGAGGCACCTGTGTGGACAGTGGAGGAGATCAAAGGTGTCTCTGTTTGCCTACCTATGGAGGAGACTTCTGCGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099412:ENSDART00000162835:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]