HsaINT0017006 @ hg38
Intron Retention
Gene
ENSG00000132692 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr1:156641948-156646145:+
Coord C1 exon
chr1:156641948-156642275
Coord A exon
chr1:156642276-156646046
Coord C2 exon
chr1:156646047-156646145
Length
3771 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTCTCATGTCCCTCTGTCAGCCT
3' ss Score
5.89
Exon sequences
Seq C1 exon
CCTTGCTCTCGCCGCTGCTGCCGGAGCCGAAGCAGAGAAGGCAGCGGGTCCCGTGACCGTCCCGAGAGCCCCGCGCTCCCGACCAGGGGGCGGGGGCGGCCCCGGGGAGGGCGGGGCAGGGGCGGGGGGAAGAAAGGGGGTTTTGTGCTGCGCCGGGAGGGCCGGCGCCCTCTTCCGAATGTCCTGCGGCCCCAGCCTCTCCTCACGCTCGCGCAGTCTCCGCCGCAGTCTCAGCTGCAGCTGCAGGACTGAGCCGTGCACCCGGAGGAGACCCCCGGAGGAGGCGACAAACTTCGCAGTGCCGCGACCCAACCCCAGCCCTGGGTAG
Seq A exon
GTGAGTGCCTCCGCAGCCCCGCCGCCCGCCGTGGGGTCGGGGACAGGGAGAAGGGAGTGCCTGCCTGGTCTGCGCCCCCCGCCTGTCAGCCCTTGCCTCGAGGCTCTGGGGCACCCAACTCGTCGACTCCTGACACCGCAGCGGGGTAGGCTGCTGGACAGCCCCGAGCGCCTGCAGCTGCTGCTGCCATCTCTGATCTACATGCTTCCAGCTCTGCCAGTGGCAGCCCCCCTGCTGCTCGCAGTCTGATCAGCAACCCCTCGGGTCCTCGCATCTTCCCTGCTGCGCGCTCCTGTCCCAGCGCGGCCGCCGAGATTTCCGACCTTGTCCCAGGCAGGGCGGTAGCGTTCCGGATCAGTCCTTGCCTCCGTGCCCCCACGCACAGGCAGCTCCAGGAGCAGCGGCCAGCAACCCTTCTGGGGACACCTTACTGTAGTCCGGCAGGACAGCCGATCAGAGCCGCTCTAGGGGGTGGTCGGAGTGCCCATTTCGGCTGGAATCCCAACTCGGCTCCTTGCTCTGTGACCTTGGGGTAGTTAGTTGACTTCTCTGAACCTCGGGTTCCTCATCGGTGTAATGAGCAAAACATAAACAATCTTTTTCTCACAGTTGAGGTTATCCACAGGAAGCATTTAGGAGAACTGGCTCAGGTAGACATCAGTAACTATTAGCTGGAATTCGGTTACCACTATTGCATTCCTTCCTAGCACTGCCAGGGGCCTGGGAATTCCCTCTCCCAGGTATTTCCATATCCTGTCAGGTATTCCCCCACCTATTGGAATAGCTCTGCCTACATGGTTCTAATAGGACCAAGAGATTGGCGTCAAGTCCAAGGGGCACCATTATTATCTGCATTACTTAGATTGCAGATGATGACAGTAAGATCAGGGAACAGTGTTACCCTTAGACCCACCCACAGTATTACCAGTGCCTATGTTGCTATGGCTAACTTTGCTATTTATAACAGCATCATCCACATTTCAGATTCTATACGAGAGGGATCTGCAACTGCTCGGCTGGTGTCATTGCTAATAGTATTATTAGTTTTGCTTCCAATAAAAAGGACTATTTATATGATGATTGCAATTACTTCTACAGGCCCTAAGGCCCTGCTTATATTGTGTAGGCTCATGTTGCTCCTCATGAAGCCGTTAAGGGGGTAGCAGAGAGCTTCCCTCCTGCTATAGCCAAAGCTCTGGCTTCTTGTGCCTCCCTGCTGACCCTGCTGAGTGCTGGAGCTCAGTTCCTATGGGACAGACCTTGGCTGCCGGCTGATGGGCATTCAGCATGGAGGTGGTGGGTGTTGTTAGATGTGTGTACACACGTGCATGCCTACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGGTCTTAACTCTCTGGGTTGGGTCTATGAAGACTGTGAGGGAGATGGACATCCCGGGTCAGACAGAAATGATGTGACAAGAGGAAAGTTTCCTGAACAGCTCAAGAAATTCAAAACAAGGGCAGAGATACAGACGCTGGAGCTGAAACAGAGAGGGGGATGTTGTGGCGTCAAGGGAACGGACCGCATGACTGCTGAGCTCTCAGGGTTAGAGTTGGAGAGGTGTGGCCTGCTCTGGAGGAAGAGAAGAGGAAGTGGAGATGAGTGGTGTGTGGGATAGAGAAGGCCACAGAACCCTGGACCCCTGGGTTCTGAGGCTGGTACCGGATGTGGGGAAGTCTGAGTTTCCTCAGGGCTCCTAGCTGCAATTGGGAGGCTGAGGCCCGAGACTGGAGAGACAGAGCTCTCTCAGAACTGCACGGGGCTACCCTCTTGGCCTCACTGGTCAGTGACTCCCATTTTTGGGGTCAAGGGTAGGTTGCCCTCCATGTTCCAGAGCAGTTAGGTCCTCATTGGCCTTAGGCCCTCTTCCCTCACTCTCCCACTGTCAGACAGAGGTGAAAGGGTGGTCCAGGGTGTTGGCCCCAAAATGACTCCAACTATATGGGTCTCTGGGCTGCCCGTCAGAGAGATGGGAGCCAGGTCTGTGAGCAGCTCCAGCTCCAGCCCAGAGAGAAGGGAGGGAGGGCACCAGAAGGGGGCCAGGCCCAGGCCCTGGCACAGCTCAGATGCATGGCAAACAGTCTTCCCAGCACCCGGTGGGCACTGGCTGCTCCTGCCCAATGGTCCCCACTCCAGCCCCAGAACAGTCCTCCCAAGCACCCCAATGCCTGGAGCTGGTCTCCGCACCTCTAATCTGGCCCCATCAAGAACCTCCTCCCTCTGAAAGGTCAGAGAGAGGCCCTAAGCATCTGGTTGTGCCACTCCTCTCCCAACTCTGACCCTAGGGAATGATATCCAGACACAGTGGGGGAGATGGGGGTTATGATGGCAGGGAGGTGGGAGGATCTGGGAAAAGTAGGAAATTTCCCATCATCTCAGGCTTAGGAAAGTGCAGGGACAGGTATGAAGGCAGATGCTGAGAGGGCAGGGAAGATGGGGGATAAACAGTGGGCCTGGAATGGGAGTGCACAGCCAGTGGAATAAACCTGATCTCTAGGAAGTCCTGCCTGTAGTCTAACCTTCAATTCTCTTGCTGCATCATTGGCCTATTCCATGGCATACCTGGATCTCCATGCTCTTCTAAGTTTAGCCCAACCCTTAAAGATGATGTAGCTCTGAGTCTTCTCTCCTGGGAGCACATTGCCCTCGTGCCTGACTTGGCTTTACTAGGGATCCAGGGTCAGCCCTATCCTTCTCTGAGCCTCAGTCTCCATTTCTCAATGTCACAACACATCCTTTTTATGAGAGTGTAAGTGCTTCGAGATCTTTGGAGGAATATTCTGGGTTCTAGAGCTTCTGATAGCCAGGGGTAGGAAGGGGTAGCCCCTCCCATTTATTCTCCCCCCCCTTAGTCCACCCTCCAGCCCAAGGCTTTCACAAAAGGTAGGGTGGGGGAAGGGAGGGGCTGGATAGAGGCCAGACTGGCAGAGACAGGGGCTTTGTCCCAACTGATTTCTGAGCCAAGAGTTCCGGTGGGAAAGCCCGTGCCAGGCAGAAAGGAGAGGCTGGGAAGAAGAAGGGAGGAGGCAGCCAAGGAAGGGGGATGGAGAATGTTGGGGAGTAAAGAGAGGAGTTTCCTTACAAATAATGGTGGGGAGGAAGTAGAGGAGAGGGTGGGCTCAGGAGAAGCTGTGCTTACTTGCGTTCGGTCTAGGAGGCCCTCCTGGAAAAGGCCAGGTGAGTATGGTGTCCCTGGAGGCAGGGACAGTCTAGAAGGCAGAAGAGGCTAAAGAGATACTATGGGAGAAGGCTCTGGGTTCGAGGAAGGAGTCTGGCACTGGGAGGAGCAGATGGAATTCTGAGTATAAGAGCACCCACCATTCATGCTGTAAACTGAGCTCCTACTGTCTGCCTGGTGCTATGCATTTGTACAGGAGTTTTAAGATACTAAACACTCTCAAAGCACATGGTCCTATCTCAACTCATGAGATAGTAATGATGATGCTTTTTTATAAGTAAGAAAATAAAGGCTCAGAGAAGGTAAGGAGCTTGGCTTAGGTCACACAGTGAGTTGACTAGGACTCGGGTTTTGGTTCTGAGAAGAAATCACTTGCTGGGAAGATGGGGATCAGAAACAGAGAGTCCATGGTGATGTGAAGGTAGGGGACTTCTGGAGCCAGGATATGTGTGAACCCACATGGGTGTGGTAGGGAGCAGGGGGGAAGTCCATCCTGAAGTCTAACCCCATCTTTCCTTCTCATGTCCCTCTGTCAG
Seq C2 exon
CCTGCAGCATGGCCCAGCTGTTCCTGCCCCTGCTGGCAGCCCTGGTCCTGGCCCAGGCTCCTGCAGCTTTAGCAGATGTTCTGGAAGGAGACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132692:ENST00000329117:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0768612=V-set=PU(10.7=48.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development