HsaINT0017006 @ hg19
Intron Retention
Gene
ENSG00000132692 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:23059]
Coordinates
chr1:156611740-156615937:+
Coord C1 exon
chr1:156611740-156612067
Coord A exon
chr1:156612068-156615838
Coord C2 exon
chr1:156615839-156615937
Length
3771 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTCTCATGTCCCTCTGTCAGCCT
3' ss Score
5.89
Exon sequences
Seq C1 exon
CCTTGCTCTCGCCGCTGCTGCCGGAGCCGAAGCAGAGAAGGCAGCGGGTCCCGTGACCGTCCCGAGAGCCCCGCGCTCCCGACCAGGGGGCGGGGGCGGCCCCGGGGAGGGCGGGGCAGGGGCGGGGGGAAGAAAGGGGGTTTTGTGCTGCGCCGGGAGGGCCGGCGCCCTCTTCCGAATGTCCTGCGGCCCCAGCCTCTCCTCACGCTCGCGCAGTCTCCGCCGCAGTCTCAGCTGCAGCTGCAGGACTGAGCCGTGCACCCGGAGGAGACCCCCGGAGGAGGCGACAAACTTCGCAGTGCCGCGACCCAACCCCAGCCCTGGGTAG
Seq A exon
GTGAGTGCCTCCGCAGCCCCGCCGCCCGCCGTGGGGTCGGGGACAGGGAGAAGGGAGTGCCTGCCTGGTCTGCGCCCCCCGCCTGTCAGCCCTTGCCTCGAGGCTCTGGGGCACCCAACTCGTCGACTCCTGACACCGCAGCGGGGTAGGCTGCTGGACAGCCCCGAGCGCCTGCAGCTGCTGCTGCCATCTCTGATCTACATGCTTCCAGCTCTGCCAGTGGCAGCCCCCCTGCTGCTCGCAGTCTGATCAGCAACCCCTCGGGTCCTCGCATCTTCCCTGCTGCGCGCTCCTGTCCCAGCGCGGCCGCCGAGATTTCCGACCTTGTCCCAGGCAGGGCGGTAGCGTTCCGGATCAGTCCTTGCCTCCGTGCCCCCACGCACAGGCAGCTCCAGGAGCAGCGGCCAGCAACCCTTCTGGGGACACCTTACTGTAGTCCGGCAGGACAGCCGATCAGAGCCGCTCTAGGGGGTGGTCGGAGTGCCCATTTCGGCTGGAATCCCAACTCGGCTCCTTGCTCTGTGACCTTGGGGTAGTTAGTTGACTTCTCTGAACCTCGGGTTCCTCATCGGTGTAATGAGCAAAACATAAACAATCTTTTTCTCACAGTTGAGGTTATCCACAGGAAGCATTTAGGAGAACTGGCTCAGGTAGACATCAGTAACTATTAGCTGGAATTCGGTTACCACTATTGCATTCCTTCCTAGCACTGCCAGGGGCCTGGGAATTCCCTCTCCCAGGTATTTCCATATCCTGTCAGGTATTCCCCCACCTATTGGAATAGCTCTGCCTACATGGTTCTAATAGGACCAAGAGATTGGCGTCAAGTCCAAGGGGCACCATTATTATCTGCATTACTTAGATTGCAGATGATGACAGTAAGATCAGGGAACAGTGTTACCCTTAGACCCACCCACAGTATTACCAGTGCCTATGTTGCTATGGCTAACTTTGCTATTTATAACAGCATCATCCACATTTCAGATTCTATACGAGAGGGATCTGCAACTGCTCGGCTGGTGTCATTGCTAATAGTATTATTAGTTTTGCTTCCAATAAAAAGGACTATTTATATGATGATTGCAATTACTTCTACAGGCCCTAAGGCCCTGCTTATATTGTGTAGGCTCATGTTGCTCCTCATGAAGCCGTTAAGGGGGTAGCAGAGAGCTTCCCTCCTGCTATAGCCAAAGCTCTGGCTTCTTGTGCCTCCCTGCTGACCCTGCTGAGTGCTGGAGCTCAGTTCCTATGGGACAGACCTTGGCTGCCGGCTGATGGGCATTCAGCATGGAGGTGGTGGGTGTTGTTAGATGTGTGTACACACGTGCATGCCTACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGGTCTTAACTCTCTGGGTTGGGTCTATGAAGACTGTGAGGGAGATGGACATCCCGGGTCAGACAGAAATGATGTGACAAGAGGAAAGTTTCCTGAACAGCTCAAGAAATTCAAAACAAGGGCAGAGATACAGACGCTGGAGCTGAAACAGAGAGGGGGATGTTGTGGCGTCAAGGGAACGGACCGCATGACTGCTGAGCTCTCAGGGTTAGAGTTGGAGAGGTGTGGCCTGCTCTGGAGGAAGAGAAGAGGAAGTGGAGATGAGTGGTGTGTGGGATAGAGAAGGCCACAGAACCCTGGACCCCTGGGTTCTGAGGCTGGTACCGGATGTGGGGAAGTCTGAGTTTCCTCAGGGCTCCTAGCTGCAATTGGGAGGCTGAGGCCCGAGACTGGAGAGACAGAGCTCTCTCAGAACTGCACGGGGCTACCCTCTTGGCCTCACTGGTCAGTGACTCCCATTTTTGGGGTCAAGGGTAGGTTGCCCTCCATGTTCCAGAGCAGTTAGGTCCTCATTGGCCTTAGGCCCTCTTCCCTCACTCTCCCACTGTCAGACAGAGGTGAAAGGGTGGTCCAGGGTGTTGGCCCCAAAATGACTCCAACTATATGGGTCTCTGGGCTGCCCGTCAGAGAGATGGGAGCCAGGTCTGTGAGCAGCTCCAGCTCCAGCCCAGAGAGAAGGGAGGGAGGGCACCAGAAGGGGGCCAGGCCCAGGCCCTGGCACAGCTCAGATGCATGGCAAACAGTCTTCCCAGCACCCGGTGGGCACTGGCTGCTCCTGCCCAATGGTCCCCACTCCAGCCCCAGAACAGTCCTCCCAAGCACCCCAATGCCTGGAGCTGGTCTCCGCACCTCTAATCTGGCCCCATCAAGAACCTCCTCCCTCTGAAAGGTCAGAGAGAGGCCCTAAGCATCTGGTTGTGCCACTCCTCTCCCAACTCTGACCCTAGGGAATGATATCCAGACACAGTGGGGGAGATGGGGGTTATGATGGCAGGGAGGTGGGAGGATCTGGGAAAAGTAGGAAATTTCCCATCATCTCAGGCTTAGGAAAGTGCAGGGACAGGTATGAAGGCAGATGCTGAGAGGGCAGGGAAGATGGGGGATAAACAGTGGGCCTGGAATGGGAGTGCACAGCCAGTGGAATAAACCTGATCTCTAGGAAGTCCTGCCTGTAGTCTAACCTTCAATTCTCTTGCTGCATCATTGGCCTATTCCATGGCATACCTGGATCTCCATGCTCTTCTAAGTTTAGCCCAACCCTTAAAGATGATGTAGCTCTGAGTCTTCTCTCCTGGGAGCACATTGCCCTCGTGCCTGACTTGGCTTTACTAGGGATCCAGGGTCAGCCCTATCCTTCTCTGAGCCTCAGTCTCCATTTCTCAATGTCACAACACATCCTTTTTATGAGAGTGTAAGTGCTTCGAGATCTTTGGAGGAATATTCTGGGTTCTAGAGCTTCTGATAGCCAGGGGTAGGAAGGGGTAGCCCCTCCCATTTATTCTCCCCCCCCTTAGTCCACCCTCCAGCCCAAGGCTTTCACAAAAGGTAGGGTGGGGGAAGGGAGGGGCTGGATAGAGGCCAGACTGGCAGAGACAGGGGCTTTGTCCCAACTGATTTCTGAGCCAAGAGTTCCGGTGGGAAAGCCCGTGCCAGGCAGAAAGGAGAGGCTGGGAAGAAGAAGGGAGGAGGCAGCCAAGGAAGGGGGATGGAGAATGTTGGGGAGTAAAGAGAGGAGTTTCCTTACAAATAATGGTGGGGAGGAAGTAGAGGAGAGGGTGGGCTCAGGAGAAGCTGTGCTTACTTGCGTTCGGTCTAGGAGGCCCTCCTGGAAAAGGCCAGGTGAGTATGGTGTCCCTGGAGGCAGGGACAGTCTAGAAGGCAGAAGAGGCTAAAGAGATACTATGGGAGAAGGCTCTGGGTTCGAGGAAGGAGTCTGGCACTGGGAGGAGCAGATGGAATTCTGAGTATAAGAGCACCCACCATTCATGCTGTAAACTGAGCTCCTACTGTCTGCCTGGTGCTATGCATTTGTACAGGAGTTTTAAGATACTAAACACTCTCAAAGCACATGGTCCTATCTCAACTCATGAGATAGTAATGATGATGCTTTTTTATAAGTAAGAAAATAAAGGCTCAGAGAAGGTAAGGAGCTTGGCTTAGGTCACACAGTGAGTTGACTAGGACTCGGGTTTTGGTTCTGAGAAGAAATCACTTGCTGGGAAGATGGGGATCAGAAACAGAGAGTCCATGGTGATGTGAAGGTAGGGGACTTCTGGAGCCAGGATATGTGTGAACCCACATGGGTGTGGTAGGGAGCAGGGGGGAAGTCCATCCTGAAGTCTAACCCCATCTTTCCTTCTCATGTCCCTCTGTCAG
Seq C2 exon
CCTGCAGCATGGCCCAGCTGTTCCTGCCCCTGCTGGCAGCCCTGGTCCTGGCCCAGGCTCCTGCAGCTTTAGCAGATGTTCTGGAAGGAGACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132692-BCAN:NM_198427:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0768612=V-set=PU(10.7=48.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)