BtaINT0025238 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015789 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr3:14237444-14241533:-
Coord C1 exon
chr3:14241476-14241533
Coord A exon
chr3:14237555-14241475
Coord C2 exon
chr3:14237444-14237554
Length
3921 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
TCCCATCTCTCCTCCTCCAGTCC
3' ss Score
10.05
Exon sequences
Seq C1 exon
AAGGAGGGGGCAAACTTCGCGGTGCCTCACCCCCACCCCGGTCCTCAGTTGCCTGCCG
Seq A exon
GTAGGTGAGTGTGACGGCATCCCGGCCTCCCACCTGGGAGGGAGAGAGAAGGGCGCTCCCGGCGGCTGCCCTGTGGTCTGCTGCCCCGACCCCTCAGCCTTTGCCTCCCGCGGCCCCGGCGCACTCACCTTACAGACCCCTGACACCTCGGCGAGGCCGGCTGTCGGCCATTTCGGAGCTCCCACGGCCCCTGCTACCAATCCTGCCATCTCCAGCTCTGCCGCTGGCACCCCCATTGCTGCTTGCAGTCTAACCCGCAGCCCCCTCGAGTCCGCGAGCTCATGGGAACGCCCCTCTGGGTTCTCGCGTCTTCCCTGCTGCGGGCTCCAGTCCCAGCACTACGGCGGAGATTTCCGACCTTCATCCTCCGCCCCTGGGTACCCACGGTGCAGGCAGCAGCGCGGGAGGAGCCGGGGCGGGCCACCCTAGGGGTACCTCCTCGTAGCTCGCGCGACAGCCGACAGGAGCCTCTGTATTGGGTGGTCCTGGCGCCCACTGGAAATGGAATCCCAACTTACTTGATAAGTGACCTTGGGCAAATTAGTTGACCTCCCTGAACCTCGGATTCCTCATTGATGTAATGCCTAAAGAGTATTTTTCTTAAAGTTGAGGTTATACATGGAAAAGACTTCCCAGGTGGCACTAGTGGTAAAGAACTCGCCTGCCAATGCAGGAGACATGAGAGAGAAGGGTTCGATCCCTGGGTGGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAAAATTCTTGCCTGGAGAATCCCCTGGACAGAGGAGCCTGGCAGGCTGCAGTCCATGGGGTCGCAAAGAGTCAGACAGGACTGGATGCAACTTAGCACGCACACAGGCATTCATGGGAAGCATTTAGTTAAGAGGCCTGGCTCAGGTAGACAGAAACTGTCAGCTGGAATTCCAGTTAGCACTCCTGTTTTCCTTCCTAGCACTGCTTTTGGGCTGGGAAGCACTCCCCTCCCCCGTCAAGTACTTCCATACTCCCTTCCTATCAGAATAGCTCAGCCCACGGGGTTCTAACAGGACTAAGATTTGCCATCAATTTTATTAGCATCATTAGTATCTGTGTTATTCCTATTCCAGGTAATACAGTGAGATCAAGGGACACTGTTACCCACAGATCCACCCCAAGTATTACCAGTGCCTGTACTGTCATGGCTAACTTTGCCGTTGATAACAGCATCACCCACATTTCAGGTTTTATAATTCACAATAGCTCAGCTGGCGATGTTGCTAATCATATTATTAGTTGTGCTTCCAATAAATAAGCCTATTTTTTACAATGACTGCAATTACTCCTGTAGGCCCTGTTAAGGCCTCAATGATATTGTGTAGGTTCCTGTTGCCCCTCACAGGGCCTCAAAGGGGATAGCTGAAAGCTTCCCCCCTGAGGTGACCAAAGTTCTGGCCTCCTGTGCATCCCTGCTGACTCTGCTGAGCACTGGAGCTCAGTTCCTATGGGGCAGACCTTGCACTGCCAGCCGGTGGACATTCAGCATGGAGATGGTGGGCACACACAGCCTGGTCTTGATTCTCTGTGGACTGGATTTATGAAGCCTGTGAGGGGATAGACATCCATCGTCAGACAGGAATGGTAATGTTGTAACATGAGGGAAGTTTCCCAAACAGCTGGGGAAACTCAACACAAGGGCAGAAATCCAGAAACTGGAGTGGAGGAATGGTGTGGCATCAGGGGAAGGGACAGGAAGAGTGCTGAGCTCCTGAGGTTAGAGATGGAGTGGTGTGTCCAGCTCTGGAGAATGAGAAGATGGAACGGAGGTGGGAGGATGTGTGGGATGGAGACTAAGGCTTGGATCCCTGAGTCTAAGTCTTGGACCAAAAGAGGGGATGCTTAAGTTTTCTCAGGACTTCTAGCTATTCCAGGAAGGGGCTGAGGTCCAAGCTTGGCGGGACTGGTGAGGGGGTAGGAGGTGTGCAGAACTCTCTGCTCCTAGGAACCACACAATCAGAGCCACCCTCCTGGCCTTGCTAATCAGTGACACCCAATCCTGGAGGTAGGGGTGGGATACCCTCCATGATTCAGCACATCCAGGTCCTCATCAGCTTCAGACTTTCTCCCCTCATTCCCCCACCTACGTAACAGGGGTGAAAGGAGGTTCTAGGGTGTTGGTCCCAGAGTGGTTCCAACTATATGGGTTTCTGGGCCGCCCGTCAAAGAGCTGTGAGTAGCTCCAGCCCTAGCCCAGGGAGAGGGGAGGGAAGGCGCCAGAGAGGGGCCTAGCTCAGGACCTGGCACAGCTCAAAGGCATGGCAAAACAGTCTCCCAAGCACCCGGCAGGCACTGACTGTTCATGCCAAATGGTCCCCTCTCCAACCCCAGAAAGCAGTCCTCTCAAGTGCTCCCATGCCCAGAGCTGCTCCCAGCTTCCTCTGATTGGGTCCCAACAAGAACCTCCTCCCTCTCAAAGGTCAAAGAGAGGCTCTGGGTATCTGGCTCCTGCCATTCCACCCCCACCTCTGACCCTGAGGAAATGATGCCCAGCCACACTGGGGAAACGGAGATCACAGTGGTGGGGAGGCGTCCTTAGGAAGATCTGGGATCTTTGGGAGGATCTGGGAGAAGAGGGTAATTTCCTATCAGCTCAGGCTCAGGAAATGGGATATATATATATATATATATATATATATATATATATATATATATACACAAGGGCAGAGCCTGATTGGTCAGGGAAGATGGGGAGTAGCCAGTGGGAAGAAGCCTGATGTCAAGGAAGTCTTGCTTATAGTCTAACCTTCATCTCTCCTGCTGCACCCCTGGCCTATTCCATGGCAGTTTGGGACTCCATGCTCTTTTGAGGCTAGGCCAACCATTAAAAATGAAGTTGGCTCTGCAGCCTTCCCTCCTTGGGGCACACTGGCCTGGTACTTGACTTGGTTTCACTGGGGACTCAGTTTCAACCCTATCCCTCTCTGAGCCCTTTCTCAATGTCCCACCCCCACCCATCCATTATGAGAGTGTAATAAGTGCCTTGAGATCTTCAGAGGAATAGTCTGAGTTCTCAGAGCTTCTGATGGCCAAGAGCAGATGGGAAATGGTCCCTCTCATTTATTCTCACACATCCCCCTTAGCCTGGTGCTGGAGTTGGGGGAGGAAGAGGCTGGATGGAGTCCAGACTAGCAGAGACAGGGGCTTTGTCCCAGCTGGTTTCTGAGCCAGGAGATCCGGTGGGAAAGCCCGTGCCAGGCAGAAAGGAAAGGCTGGGAAGGAGGGAGAAGGCAGCCAAGGAGGAGGGGGTGGAGGATGCTGGGGGGTAAAGAGAAGAGTTTCCTTATAAGTAATGGTGCAGTGTAGAGGGGGGAGGTCAAGGAGGGGTTAGACTGGAGAGAGCTGTACATTGCCTGGGTTTAGTCTAGGAAGTCTTCCTGGAGGAAGCTAGGGAGGAAGGTATAGGGAGGAAAAGTTGGATAGGTATTGTGGGAGGAGGAGGGTCCAAACAAGTCTGGCCCTGGGAGGACAGAGGGGACTCTAAGCATAATAGCATCTGCCATTATGCTATATGCCATAAGCACTTGTTGAGCTCTTACTGTATGCAGGGTTTATTTGTTTCTGTTGTTTTTCTTTTTTGATGGAATGCACTCTGAAAGCACATAGCCTCATCACAACCTGTGAAGTGGTAGTAATGGTGCTCCTTTACAAGTAAGAAAATAAAGGCTTAATGAGAGAATAAAGAACTTGCCTGAAGTCACATGGTGAGCTGACAGCACCCAGGTCTTGGTTCTGAATAAGAATCCCCTGGGGGGAGACAGGGATCAGAAGGAGTGTTAATAAATAATGAGGTGGGGACAGTGGGCTCCTGGAGTCAGGATATGTATGATCCATGTGGATCCGGTGGGGAGTCAGAAGTCCATCCTGAGGTCTAATCCCATCTCTCCTCCTCCAG
Seq C2 exon
TCCCTCCCTCATCCTGCAGCATGGCCCCACTGTTCCTGCCCCTCCTGGCAACCCTGGTTCTGGCCTGGATCCCTGTGGCCTTGGCTGATGCTCTGGAAGGAGACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015789:ENSBTAT00000020965:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0768612=V-set=PU(1.6=6.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]