DreINT0037265 @ danRer10
Intron Retention
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17152469-17152854:+
Coord C1 exon
chr21:17152469-17152529
Coord A exon
chr21:17152530-17152801
Coord C2 exon
chr21:17152802-17152854
Length
272 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTCTGTCTTGTCTCTGCCAGCTC
3' ss Score
9.2
Exon sequences
Seq C1 exon
AGTCTCAAGGTCAGGAGCACCAAGGAGTGCAAGGACCTGACAGCCAAATACTCACTGGAAA
Seq A exon
GTAAGAAACCATAAGATGGCATTCGTTTGTTTTCATGTATTATATGGTCATTATATTACCTGTAGTATTTTCATTGAGCTTATGTGTTGCACATTTTGCTCTCAGCATGTCATGTATTTCCTTCTTTTTAATTCAGTTGCATAAAACCCATTGAGTGGGTGGATTAGATAAGGTTTCAAACATCGGCATTTGAGCCTGCAGTATGAAAGTGGCTCTTGTGAATAATCGCCCACTATGTGTGTGTGTGTTCTCTTCTGTCTTGTCTCTGCCAG
Seq C2 exon
CTCTGCTCTATAAACCAGTGGACAGAGTGACCCGGAGCACGCTTGTTTTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286:ENSDART00000101282:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]