RnoINT0025284 @ rn6
Intron Retention
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14463621-14466929:-
Coord C1 exon
chr20:14466869-14466929
Coord A exon
chr20:14463674-14466868
Coord C2 exon
chr20:14463621-14463673
Length
3195 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CCTTGCCTGTCTCTTCACAGCTC
3' ss Score
11.94
Exon sequences
Seq C1 exon
AACCTGAGGGCCAGAAGCAACAAGGACGTCAAGGACTCAACTACCAAGAACTCTTTGGAAA
Seq A exon
GTGAGTTCTCCCTGCAGAGGAACAGCTTGTTTGTGCCTTTGTGTGTACCTTTCCAACGGAGTGGGCATTGCTGGAAAGACAGACACTACACCTCATTGGATCCCCACTCTCCTCTCCCTCGCAGCAGCCTACTTACAAGTTAGACTTCACGCAGGGAGAGGGAGGAAGAGGGGCAGAGACCAGCTTTGGTCCCAGCAAGGCAGAACGGATGAGATCCAGACAAGTTTGTTGATGACACGATAGTAGGGAAACACTGTAGGAGGTCTCGGGTACCAGGGGCTTCTAAGGTCATCGTGGGGCAACGGGTAAAAGGTGGTTGGTTCCGTGCCTAAAGAGGTACGATCCCTGTGGCCCACATGGTGGAAGGAGAGAGCCGGTTCTCAAAAGTTACCCTCCAGATTCCACATGCGCACTTGTGCCCGATGTCCAGTGCACATGCGTGCAGACGCGCACACAAAATAAATTAATCTCTGTGTGTAAAAACTCTACTGAGGGGCTAGAGACGTGGTTCAGCCATTAGAAGCCTTAACATCCCTTTCAGAAGGCAGGACCCAGGTTTGGTTCCCAGTGCCCACATGGCAGCTCACATAGACATGGTATTTTTTTTTTTTAATCACATATTAAAGTCTCACTGTGAAGACCAGCAAGGTAGACACACCTGTAATGTCAGCATTCAGGAGACACTTAGGGAAAAGCTGTGCCTGAGGCTGGCCCGGGATACTCAGTGAGACCCTATCTAAGAAAAAAATACACACATTGCTGTGCCTGGCGCTGGGACACGCAGCTCTAGGCTGAGGTACTGAGGAAGCAGACGCGAAGGATTGCAAGTTTGGGCCAGTGAGAGCCCCGTCCTAAAACACTTTGTAAAAACTTTAAGAAAGTTTTATTTTTGTTTTATGTGTGTTGAGTGTTTGACCTGGACGTGTGTATGTGCACCATATGTGCCTAGTACCCACAGAGGTTGGAAAAGGGCATTAGATCCCCTGGGGCTGCAGTTACAGGCAAATGTGAGCTGTTACTCGGGTGCTGGGATTTGAACTCAAGACCTCTGGAAGAGCAGCATGCACTCTTTACTGACGCGCCATCTCTCCAGCCGCCTTAAAGTCCCTTTTAAGAATACCATCACTCTGTCTCCACTGGCCCTGCAAGTAGGACTGTATTTCTCTTCTCTCATAGGTAGCCGTCTAGTTTTGCAACTGAGTAGAACCACTGAGTTCTTCGTTTTATTTTATTGGCTTTGGAGACAGGGTCTCACACCATGGTCCGGACTTGCCTAGAACTCACTGCTATCCTCCTGACTCAGCCTCCTATGTGGGGGGATTATTGATAAGAGCTACCACACATGTCTTAGTTGAGTAGTTCATAAAAATAGTGGGTTTTTTGGCCTGGGGCTATAGCTTGGTGGTACGTACAGCTCTCTCTTAGCCTGCACAGCCCCGATGCTCAGTCTCCATACACACAAGTAAGGGTTCATTCGGCTCACAGCCCGAAAGGATGAGAAGGTCAAGGTCAGGCAGCTGCACTCAGGAAGGGCTGTCTTCACAGTGGGGACTCGGCAGAGCCCCAGCACACACAGGCCGTCACACAGCAAGTCAGACAAGTGTGCCCGAGATAGTTCAAGTCGACAGCAAGCCACTTCCTTGGTGATCCATGTGTAGGTGAATTCGCTCAGGGGCAGAGCCCCATCATGTCTCAAAGGGAAAGCATATCAGCTCCAGACAGCAGACAACAAGGCAAGTACTTCATCGCATAAAGGGCCTGAGCGGACACAGGTAGAGAGGCAGGCTGGCGAGCTACTGAATCCTGGGACCGTGTGTTCAACCTCTGTGCTAATCAGAAAGTAGTTAGGTTGTTAGGCTGGTGGGAACAGTTAGGGTAGTATGAATAGTGAGGCCGGTGTGTGAAGAGGAGTTAGGCTAGTGTGAAGAAGAGTTAGGCTGGCGTGAACAGTTAGGCCGTTATGAGGAGGAGTTAGACTGGTGTGAATATTTAGGCCAGTGTGAATAGTTAGGCTTGTGTGAACAGATGGCCTGGTGTGAATAGTTAGGTTAGTGTGAATAGTTGGGCTGATGTGTGAACAGTGAGGCTGGTGTTAAGAAGAGTGAGACTGGTGTGAACAGTTAGGGTAGTATGAATAGTTAGGCTGCTGTGAAAAGGAGTGAGGTTGGTATGAACAGATAGGCTAGTGTGACTAGTTAGGCTAGTGTGACTAGTTAGGCTGGTATGTGACCAGTGAAGCTGGTGTTAAGAGGAGTGAGGCTGGTGTGAACAGTTAGGGTACTGTGAATAATTAGGCTGCTGTGAAAAGGAGTTAGGCTGGTGTGAACAGATAGGCTGGTGTGAATAGTTGGGCTAGTGAATAGTTAAGCTAGTGTGAGTAGTTAGGCTGGTGTGAACGGTGAGGTGTTAAGAGGAGTGAGGCCGGTGTGAACAGTTATACTCACTCATAGAGAACCATGGAGATAGTTCTATTCCCCAGAACTCCCCTATCCCCACCCCGCTCCTTAGCCCTTCTGAGCCCTAGTTTCCCCTATGTAAAAAAATGGAGACAGCAGCTGGGCAGTGGTCCAGCACTCCAGGAGGCAGAGGCAGGTGGGTCTCTGGGAGTTCAAGACCACCCTGGGCTATAACCAGGACTATCTCCCCCCCCCAAAAAAAATGGAAACAACAGTGTGTACCCTGCAGCAGCCATGCAAATTATGTAAAGGAGTGTGCTTGGATCTGGTAGGAAGACCTTAAGTGTCTGTGCTCGTACAAATGATGCTCATTGCTGTGTAGGAGAAATAAAGGTGGCCCAGGCTGGCCCGGGTGTCCCCAGATAAGTCCCAGATCTCCCACCTGGTATCCCAGTTGGCTTCTGTCCCTCTCGGATCTGGGCTTCTGAAACCTGTTTAGCCATGGACTCTGGGAGCCGCATTCTGGACCACTATAGGGTAGGATTGTGGCCCTCACCGTCCTCCTTGACAGTCCCGGACAGCAACATGTATGGGCTGAACCTTTGCAGAGGCTCAGGCCTGAGCAGCAGCTCTGAACTCAAAGCCTGTAGTATCGCAGACAGATGCTCGAGTTTGGCCTCCTGGCCCTGCAAAGGGGAGGTGGGCCTGCCCTTCCTCCTGGTTTTGAGACACCAGGAGGCAGGTTTACTCTTGTTTTCTCCAAGTGTGGTCATATCTCCCCTTGCCTGTCTCTTCACAG
Seq C2 exon
CTCTGCTCTACAAACCTGTGGACCGGGTGACGAGGAGCACACTAGTCCTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304:ENSRNOT00000001766:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]