DreINT0038201 @ danRer10
Intron Retention
Gene
ENSDARG00000102802 | brdt
Description
bromodomain, testis-specific [Source:ZFIN;Acc:ZDB-GENE-030131-5928]
Coordinates
chr6:24290223-24293106:-
Coord C1 exon
chr6:24292951-24293106
Coord A exon
chr6:24290523-24292950
Coord C2 exon
chr6:24290223-24290522
Length
2428 bp
Sequences
Splice sites
5' ss Seq
AATGTAACC
5' ss Score
4.42
3' ss Seq
ACTGCTCTCCCTGTTTACAGTGG
3' ss Score
9.3
Exon sequences
Seq C1 exon
GCGCGTGCGCATTAGTTCATTTTCACCTCCCCTCAGCCCTGCTCAGTGCTTTATCATTTCATAGTTGTCTTAGTGAGAATTTTCAAGCTGCAGAGATGACCGATGTTCAACTCTCGTCAGAAGCTGTCAACCAAAGCCACGGAAAAGAGACAAAAT
Seq A exon
GTAACCATTTAGCAGACACTAAAGAGAAGAATTGAGCTGTGGCGATCGACAGAATGTTCTAGAAGGGTCATGTGATGTCCGGAGACCAGTTATGTCGCACTTTTAAAAAAAAATACGCTGACGTACGTCTGTGGAGTTCGACCGCCGTCGTACAAATAAACGTGATCAATTGTAAAACACCGTTTCGGGTCGAAGTCAGGTATAAAACGGGAATGTTACTAAGGGGTGCGTTTTAAAACAATGTTTTCTCGGTTTTAAAGGCGCGAGGGGAAGAAGGGAGCACGTGAGGGGTCTTGTCCAATGGGACTGGGCGCTTTCAGCAGGAGGGTATAAATACCAGGCGGTTGCCGTGAGAGACGTCCGCCATTGATGACTAACCTTTCACAGAAACAAGAGTTATTTCAAACGTATACATGTTTATGGTGTTAATTTGGTCTGCTGGCTAAGAAGGCTTAGCTTAAAATCTTTAAATCGTTTTTCAGAGAGGTTTTTTTCGGGCTCAAAACATCAACAAGATCCTTCGGTTGGTGAAGTTTTCCAGCTGAGCTCCTTCTGCACTGCAGCGTCTGTCTCAGTTCGGCCGTTTAAACTTTCTTTGTTGTGCTCGAGACGGAAAGGTAAATTTTGGGTCCAAGTTGAGCTAGCTTCATTTAGCTGGCGGAATGGCTATGGGAGGGACTGTTAGCTGAGCTCAATGTCAGCATCTGACGGGGCGGGGTAATGTGTGGCTAGCTATGCTAGCGTTAGCCGGGCGCCATTTTGTGGCTCAAGGCTTGCTAACACAATTATCGGTGAATTCGTGTAAACTGATCTCTAATTACTTGAAATGTGTTATATGGATGTATACGTTGCAAAGTGTCCGTAAAGATGACGGTTTATGCAGAGGCGACACTTTTGTGGGGGTTTTTTTTGTCGAAACGGAAGTTGGTGTTGCGTCATCCAATGAGGTCGTCGAAATTATGTAACACGCGTTGTCCAGGATTGAGTAAAGGAACAAGCTAAATGTTGCGTGTAAACGCACCATATGGCATAACGTTATCTATCTCAAATGAGTGTATGGAGCCGTCTCTGATTGTATATTATCATATGCGTTAGCCGTTTTGTTGATAAACAGAATTTCTCTCTGCCTGATTTGTTCAAAGTTAGACGAATGTCATTCTCCTTTGTGCAGTATTCCATTTGTCCAATTGGCATGCGTTTGACTACAACAAAACAAATATAAATAGTCACTGCGTCAATACATTTGTCTAGACCAAATGCAAAAGGTTAAAAACAAACATGAACTTCTATTGTTTTTTTTTTCTCCAAATGAACATTGTCAAAGAAAATTTACAACCTTGCTTTCTCCCCTGTCCTCCTAAAAACATTCCCTCCCCATTCATAATCAGACCAGTGTGGAACGAAATGTTTTACGTTATAGCATTCAAAAATAAAATAAAAAAATGCATCTTTACGTTTTATTTTTCATAGTTTTTCTTGTATTAAATTTGTAAGTCTTTAGCCTTCTTGTACAATGTTTTTGTTTGTTTCTAAAACTTTTATATAAATAAAGTGCACTTAATGATCAATTTAACTTTTGTAAATGTTTTTGATTATGAGCAAAAGTATATTTTACTGAACAAGATGATGACCTTTTAGTTTGGGGTAAGTAAGAAAAGTATAACCTCTGTTGGTAAGCTAAATAAAGCTTGCTCACGAGTACATTAAAGAATGTCCCTTATCAGTTAGATGTATTGTGTTAAAGCATTGTCAAAGGTAAGTTAACGTATAAATGAAACTGAAATCCCAAGTATTTGAAAAGTAGTGAATTTTATTTGTGGATTATATTTATTGTGTTTAATTGACAAGTGGATTAGACACTAGTTTCAAAAGTAATATCTAGAATTTTTAATTTATTTTGAAAATGTCAAGTTGACAATTTAATTTGAAAGCACAAGTTAATTTTATATTGCAATAGATAAGTCATCTGTACTGTATAATTTTTACATAATTGCCATCATGTTTAGACTTGAATTTATGGGATTTTAGTTGACAAGTAATTTATACATTTGGTTATCTTTTATTATAATTTTCTATATTCAGTAAATGATTCGGATTAAACTCTAAAAGGTTTTTTTATTTTATTTCAAGAGTGAAGCTAAAAAGCATTATAGCAGTGTGCTTTTATTAGGCAATAGAGGGCAGTGCATACCACAAAACCTGCAGTAGTCCTGCATACTAGACTACTGTATGAGATTGACTGATTTGGCACTTGTGCATTACTAAAAAGAATTTGTATTTGATATGAGCTCCTACGTATATGCTTATCACAAAACGACTTGTGATTTAAACAGGCTTGTGCTCTGCTGTATTTTTCTGCTTTGCCTTTGATAATAAACAGCAGTGCAGAATGGTATGAGGATGTTGACACTGCTCTCCCTGTTTACAG
Seq C2 exon
TGGCACAGACAGTGGATCTGTAATGCTCGCTGAGCTGCCTAGGTGTAGCGGCGAAAACCCTTTTCACACCGATCAGCATCACTCCCAGGATCAGCTCAGGCTATGTCTGATGTGAAACCCCCACAGCATTTCACCATGAATGGGAATCCCCCTCCCCCAGAGTTCAAGAACCCCAAAAAGCCTGGCCGCCTCACCAATCATTTGCAATATATAGAAAAAGTGGTGATTAGGGCCCTGTGGAAACATCATTTCTCCTGGCCATTCAGACAGCCAGTGGATGCGGTCAGACTCAATTTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102802:ENSDART00000168355:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(32.6=42.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]