DreINT0038202 @ danRer10
Intron Retention
Gene
ENSDARG00000102802 | brdt
Description
bromodomain, testis-specific [Source:ZFIN;Acc:ZDB-GENE-030131-5928]
Coordinates
chr6:24282384-24284852:-
Coord C1 exon
chr6:24284578-24284852
Coord A exon
chr6:24282477-24284577
Coord C2 exon
chr6:24282384-24282476
Length
2101 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TTATGGGTGTTTCTTTATAGAAA
3' ss Score
7.97
Exon sequences
Seq C1 exon
GCGGAAAGAGAGTAGAGCATGTGACTCTGAGGAGGAGATGAACACTTTACCTATGTCTTATGAAGAGAAACGCCAACTAAGTCTAGACATTAACAAGCTTCCTGGAGACAAACTTGGGAAAGTAGTGAACATCATCAAGGCACGAGAACCCCTGTTAAGGGACACAGACCCTGAAGAGATCGAAATCGACTTTGAGACTCTCAAACCATCAACTCTTCGAGCTCTTGAGTGCTATGTTGTGGGTTGTCTCCGGAAAAAAACTAAAGAAACCAACA
Seq A exon
GTGAGTAATGTTAAATAACATATCATATATTAACAGGATATATTAACAACTCTTTTTTACTTTTTTGAAATATGTAAACAAAATGATCAGACGTACAAAAAAATTTAATTGCCCATGTATAAATAATTTTAAACATTAACTTTTGTCATTCTATGAAGAATTAGTATTGTAGTATATCATACTACAATGATTGATTGTAATATGATATACTATTGAGTATTGTCTGTATGTATATGAGTTCAATGAAGTGTATCATGAAGAGTATTGTAGTATATAATCTAAAGCAGGTGTGTCAAACCCTACATGATTTAGTTTCAACCCTGCTTCAATACGCTTCTCTGTTGATTTCAAATAAGCCTGAAGGACTTTGTTTTGATCAGGTGTTTAAAGGGCCATGACACCCCCCATTTTCAGTTAAAGTCTACTTCAGAATTTTTTCAAAAGATGCATGATTAATGGGCGTGGAGCTCCGCGAGCATCGGGCAGGAGTGGGCGTAGTTAGCAGGGGAGAACGTGAGCGAACAACTGTTGTCAGTTAGCTCACAAAATGAAACAAACCGTGAGGAGACGCATGCGTTTATAGTTTACAAAGTTAAAATGCAAAGAAATGAACAGTGATTTAATGCCCTGCTACACTTGTTATTCGTAATTTCATATACACATAACCACATTTTATATCATTATAAAGATAAGTGTGTTCATGTAAACCCTATAAATGAGGACTTCTCCCTCAATCCCCGTATCCAGCAGACTCAGTGCAGTTTTAATCAGTTTTAACCATTAGTCCTGCTGGTAATCTAGAGGATTTAGGCAAACACAGCAGCACAGTGATGTGTCTGAATGTGAACGAACTCCTGATAAAAGACAGCGTCCGCCATTCTCTAATTCTCGTGCTGCTCTCCCGACAAAAATGCTAGCAGCACACACACAGCTTTGCTGTATGATTGGCCCTGACAAGATCGCGGGGAAAAACATGCAGCAAACCCTGTGGATCATGGAAACAAACGCATATGAGCCTTCATGAACGGCTAAATTCTGTGTGCCGTGGGTCCTTGTCTCACAGCTCGGGCTTGACTCTGGCAGGTCTCATGAATAATTAAGCAGCCGGCTCTTCTCATAGGATAAGAAAACTCCGCTATGAATAATAATGAAAAACCGACGCGTCATCATTGCACTTGCAGTACTGCGCTACGTCGCCGATTTTGATCCCGCCCCAAAAATCATTTTAAACCCGGAAGCTGAAATTAGCTGACAAAAGCTCAAAATTATCCAGTTTTCCCCACAATTAAAGCTGACAGGTGCTAACATTGTCTTAACTGATGCTCAACACACACAAATCTGTTAATATAAAAAAAAAAGTTATCCAGGGTGTCCTGACCCTTTAATTAGGGTTGGAAGTAATGCTGCAGTCACACTAGAGTTTGAGCATGTGAAATTCTGTCATACGACACTGTGAAAAGGGGCAAGATTACACAAGATGATTAGAGATTTAAAAAATCAAGCGATTGGTCCATATCTAAAATTTTCTGTCCAGAGAGGTCATGTTTTTATCTTTGATTGGTCTCACGCAGTCATTTGATGTGATTTCGCAGGTCAGAGTTCACCAAGCTTGAACTTTGCAATGCAGCGAACTACGAAACTTGTCTCACAAGCTTGTATTTTTGGTCTCGCATTCTCACACGTATGAATGGAAGTCACAGTTACAATTCTGTTATTTTTTACTCATCCTTTACCCGTTTCATACAAGTTAGAGTTATTATTTTTGTTAAACACAAAATTATATATATTGAAAAAAATTGGAAACTTGTAACCATTGACTTCCATAGTATTTAATTTTTTTTAATCTACTCAGGGCGTCAATGGTTACAGGTTTCAACATTGGTTAGTATATTTTTTTTGTGCTCAAAAAAAAAAAACACCTATGGAACCAAGTAAATGGTGTGTAGATGATGACAGTTTTTGATTTTCATGTATCCCTTTTATTATGACAGGGTCTCTTCTGTAGTTTCGGTTTTCGCCACTTAAACTCTTGTACCAAAAAATATTTAAGTTAATGTATAAAAGCGGAAAATGTAACTGATTTATGGGTGTTTCTTTATAG
Seq C2 exon
AAAACAAGCCCCCAAAGAAGTCTAAAATCAAGGAAAAGGATAAAGACCTACAACACGCAACTGGAGAACAAAACTCTCATAAAAAGACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102802:ENSDART00000168355:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF057937=TFIIF_alpha=PU(25.5=68.9),PF045028=DUF572=PU(23.1=61.1),PF027249=CDC45=PU(18.5=31.1)
A:
NA
C2:
PF057937=TFIIF_alpha=FE(12.8=100),PF045028=DUF572=FE(13.0=100),PF027249=CDC45=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]