RnoINT0026394 @ rn6
Intron Retention
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:5998810-6000133:-
Coord C1 exon
chr3:5999841-6000133
Coord A exon
chr3:5998936-5999840
Coord C2 exon
chr3:5998810-5998935
Length
905 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
CCTGCTCACTTACTCCACAGCAA
3' ss Score
9.04
Exon sequences
Seq C1 exon
ACAGCTCAAGAAGGGCGGCAAGCAGGCATCTGCATCCTATGACTCGGAGGAAGAGGAGGAGGGCCTGCCCATGAGCTACGATGAGAAGCGGCAACTCAGCCTCGACATCAACCGGCTGCCTGGCGAGAAGCTAGGTCGTGTGGTGCACATCATTCAGTCCCGGGAGCCTTCCCTTCGGGACTCGAACCCAGACGAGATTGAGATTGACTTTGAGACCCTGAAGCCAACCACACTTCGGGAACTGGAGAGATATGTCAAGTCTTGTTTACAGAAAAAGCAGAGGAAACCATTGT
Seq A exon
GTAAGTTGTCTGGGAGAGCATGGTGCTGGTAGCCTCTGCAGCCCCTGAGAGTGGGCACTGTGCCCACAGCTGCTTTGCTGTTTGTGCGTGCCTGCTGCCACATCCTCTTCCCTGTTCTCTGGTAGGGAAGATGCCTATTGGGCCTTAACTGGCCTGATCTGGAAAAGTAAGAAGTGGGTTTGACCCAGCCCATTCATTCACGCCCAAGCAGCACCCTTCTCATACCCCTTCCTAAGGCTCCATCAGGGCTTTAGCTGTAGGAAAGAGTCCTATCCCCTTCACTGATCATGTGTACAGAATCTTCCCAGGATGAACCCTGACCCTCGCTAAAGTGCACTCTGAATTTAATGGTTTTAACAGACAGGGACCAGTCACTGCCTGGGTCTGCAGCTGGGAGGAATTGAAGTCCTAAGGCAGCCCCTCCCTACCTGGGCTCATGCCAACCTACATGTGGCTGATGAGGTGTGTCTGGTCCTTGATCACTCCAGAACAACAGACTTAAGTAGGATGATGATGATGCGGGGGTCAGGAAGTGAAAGTTGAACTCTCTTCTAGATCATGGCAGTCTCTGTGGCTCAGGCAGGAGAAAGCAGCTACGCTGAGGGAGGACTGGGATGGGGTCTGCCTTTCCCATGAGAACAGATGACAGGTCGCAGATCAGCTCCGGGTTCCGGGAAGGAGGAGATGAGGGTATACAGTGAGGACTCAGTAGATGTGGTGTGGCAGCAGTGGTTCCAGGTCACCCTGCCGTCTCCCGCTGCAGCTCCGTATCAGATACAGTCATCCTGCAGTAAGGCCGTGGTCTATGCACTAGCGGGTGGGGCTGTGACTTTCTGACCACCTGGTTGGATGCTGGCATTTGGTAGGAGTCTCTGCCAATGTCTACCTGCTCACTTACTCCACAG
Seq C2 exon
CAACAAGCGGGAAGAAGCAGGCAGCCAAATCGAAAGAGGAGCTAGCTCAGGAGAAGAAAAAGGAGCTGGAGAAGCGGCTACAGGATGTCAGCGGACAACTGAACAGCAAGAAACCCACTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681:ENSRNOT00000065867:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCGGAGGAAGAGGAGGAG
R:
CTGACATCCTGTAGCCGCTTC
Band lengths:
344-1249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]