DreINT0038116 @ danRer10
Intron Retention
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18229790-18232849:-
Coord C1 exon
chr21:18232566-18232849
Coord A exon
chr21:18230360-18232565
Coord C2 exon
chr21:18229790-18230359
Length
2206 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
CTCTCTTTCTGTGGTGTCAGAGA
3' ss Score
6.1
Exon sequences
Seq C1 exon
GCAACCAAAGAAGGGTGGCAGAGGGCCAGGCTATGAGTCTGACGAGGAGATGTCGCTCCCCATGACGTACGATGAGAAACGGCAACTGAGCCTCGACATTAACCGGCTGCCTGGAGAGAAGCTGGGTCGGGTGGTCCATATTATTCAGTCCAGAGAGCCTTCGCTGCGTGATTCCAACCCTGATGAAATTGAAATAGATTTTGAGACGCTGAAACCTTCCACTTTGCGAGAGCTGGAGCGATACGTCAAGTCCTGTTTACAAAAGAAACAGAGGAAACCTCCAC
Seq A exon
GTAAGTGCACTCTCCTTGGCCTATGTGCCGTGCTGTTGTCATAACATGATTACTAAAGAGTTATTCATCACCATTAAAACCTGTAAGAGGAGTTCATTTTTGGGAGCACAAATAAGATTATTATTATTATTATTATTGTTGTTGTTTTCAATGTTATAACTTATAAAATCTGAAGTAATTGTAAATCTGCTTACCCAAAACATTGATGCTTCTGAATGTTTGAGGAGATCTGTATCATGGGTGCACAAACTTTTTCGTATAAAGGGCCAAAAGCCAAATATTATTGAGATCTGTGGATCGAAGTTAAATATACCAAGCTATATAACATTAAAGTTGCCATAAGTTTTTTCATAAGATTTAAAGTAAATAGAAAACATTACTTTAAATCATAATAACTAATACAGTATAACATTTAAATTAACTATAATGTAACATAACCAATCACATTTATAACACTGGATTTCAATAATGAATACACTAGTCGAGCAGAATCTGCTTTTGCATTGATTTATTCTCTATCCATCAGGTGATTGTATGTACATTTAAACTAAATCTGAGTAATTTATGATATTTCATGGAAACATTTTATTTCAGTTAGTTTTTAACAATTAAGCAAACAAAAGTACATTAGATTTGAAATGACAACCTCTAAACCAGGGATAACCAAACTTGTTCCTGGAGTTCCAGTGTCCTGCAGATTCTAGCTCCATCTCTAATCAAACACACCTGAACAAGCTAATCAAGGTCTTACTAGGTATACTTGAAACACTTAGGCAGGTGTGTTGAGGCAAGTTGGAGCTAAACCCTGCAGGGCACTGGACCTCTAGGAATGAGATTGGTGACCCCTGCTCTAAACCATGTCCATTATTCTTCCTCTCTTAGATGGGATTGTGTCCCTTTGAGTTTGAGCATCCCTGTTCCATATGAATGAAGTCTTTTGCTTAAATATACAATACTTAATTTTTGCGATTTTAGAGTGTATATTCACAACAAAAAAATGCATAGTTTGATGTCATGATCGTGTGGAATCATAGGAAGTGTAGTCTTCAAAACATGATGCTGCAAAAGTCATGTATAGGGGTGAACTGAAGTATTGAAAACTTGTAGTATAAAGTAGCACTGAAAGACATTGATGCCTAATGAAACTGCTGAAACAATTGCAGATGAGAGAAGAGCATCTTGGTTCTGTTAAAATGGCACTCTGTGCAGTCTAAATGCACAACAGCATCTAAATTATTTTAACTAAAATCAAGGACATGGTTCTCTTCACTAGTCAAACTTGCCAGATGTTAATATTTTTTAAACAGCTGGGATTATTTAAGCACAAATACTAGTGGTCAATGGATAATTCAACAAAAATATTACAAATTGTCCTTTTAACAAGCTGATTAGATAAGATGTTGACTTTTAGTAGCATATAACTGCAAGCATGCAGTCAAACTCATTGGTGGGTTTGCATCAAAGCTTCTGTGACCAAATTTGAATGTGTTAAACATTGTTCACTTTAGATTCAAGTAAAAGCCTCAATTAAGGTATTCATCCTGTAATGTAGCCACATTTCTTCAGAAGACATAAATATAAATTTGATTTCTGTTTTAAAATATTTTGGAGTAGTAAACATGTCAGGCTAAGTAATTAAAATCAATAATTGACTTTGCTGTCATCTTTTGTTTCAAAAACACAGATTTCATCACAGTTTAACATCTTTGAAGATCTTTTCAGCTAGAGATACCATTGTCATATATATATATATATATATATATATATATATATATACTGTAGGAATGGTATGGTGAACCTTTTGGCACTTCTAAAACTTTGACTTTTTCAAACTGCAGTTTACCTTAAAAACGGTTATGGTCCCATGCCTAGCGTAGATGTTGGTTTAGTTCAAATTCCCATTAACATTACTTTTTAGTATCATTGCCATCATTCTTATTATTTAATTTTTGTTTTTTGGTATATAAACATGAGCGTGATTGACTTGAGTAGTGTTTGGACTCTCAGTAATGATTTTAAACCACACTGAACTGAGCTAAACTAAACTGAACTGAACTTAAACTATAAAACCTGAACTACCCTGATCCTGTTACTATGATCATTTATGTGAAGCTGCTTTGACACAATCTACATTGTAAAAGTGCTATACAAATAAAGCTGAACTGAATTGAGTAATTACTCTTTTGCTCTCTTTCTGTGGTGTCAG
Seq C2 exon
AGAAAGGAGGTTCTGGTCCGTCTCGGCTCAGCGGCAGCAGCAGTTCCTCAGACTCGGGGAGCAGCAGCTCCAGTGGCTCCACTTCAGACAGCAGTGACTCCGACTGAACACCTTTTTATTTACTTTTTTATTTTTATTTTTTTTTAAAAACATTGTATGCAGTCAAGGTTGTTTCCCCTCTGAGACTTTTTATAAGAAAGAAAGAAAAGAGACAATAAAAATGCATCATGTCAGAATTTTTTTTTTCTCTTGGAAATGTCATGAAGAAAATTACAGATTAAAAAAGCAAATTAATAGATTGCTTTTTATTTCCACTGACTCTGAAAGGGATGTCCTGAAGCTGCAAAGAGAGGAAGTCAGTAATTCTCTTCCCTGGCATCCTGGTAATGTTGTACGTTACCATCGCAAAATAAAGCATCCCATCTCACCAGAGAGAGCAGAAAACTGAATGCTCACACTCTTCTCTCCTGATTCAACTTCTGCACCGCTCTGTGTTGTATTTATTGTTTTGTTTTTTTCGTTTTTGCTGTGGCCTCATGTTTTTCCCTATTGGACGCTGTGCCATTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527:ENSDART00000135239:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]