RnoINT0026395 @ rn6
Intron Retention
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:5997315-5998935:-
Coord C1 exon
chr3:5998810-5998935
Coord A exon
chr3:5998187-5998809
Coord C2 exon
chr3:5997315-5998186
Length
623 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
CGCTCCTGTGTCCCTTGCAGAGA
3' ss Score
11.34
Exon sequences
Seq C1 exon
CAACAAGCGGGAAGAAGCAGGCAGCCAAATCGAAAGAGGAGCTAGCTCAGGAGAAGAAAAAGGAGCTGGAGAAGCGGCTACAGGATGTCAGCGGACAACTGAACAGCAAGAAACCCACTAAGAAAG
Seq A exon
GTAACCATTGTGGGTCAACCTCCTAACCTCCTAACCTTCTAACCTTTAGGGGTGGGGGCATCTTTGGCCATTGGGGTGGTTGCAGGTAGGGGTGTGTGTGCGTGCGTGCGTGCGTGTCCGTGAAACCTAAAGGTCTATGCAGTTGGGCGCTTGGAAAGATCTCCTTGGGGCTGGCCTTGATGCTGAGGGCCTGATCTGCCCCTGCTGCCTCCTCACCCCTAAACATGGGTCACCAGCCTACAGAAGAAAGCACTGGGTTTCTGCTCTCTAGCCCAGCATGTTATTTTGATAGAGTGAGCAAGCACGCTCCAGCCCAGGGCTTCTTTGTGCCTCGGGTTGGTTTGTTAGGCCTTAGATTTAGGTGATTGGGTTTAGATTTCTCCAGAGATGCTCTACAACAGTAGGATGTGTAGGCAGTCGTCAGAGTCCGAGCCCAGTGGTCAGTTGGGATCCTACAAGTGTCTCAGTGCGGCCATGTGTCCACTGGATGCTATTTTAAGGGCATTCTTCAAATGTTTACTGTACCCCTGGGTCAAGACACATGACTTGTGACAGGGGGCAGCATGCATACTTTTGATGGCACTGTTCAGCGAGGGTCTCTCCCGCTCCTGTGTCCCTTGCAG
Seq C2 exon
AGAAGTCCGGCTCAGCTCCCTCAGGAGGCCCATCAAGGCTCAGCAGTAGCAGCTCCTCCGAGTCTGCGAGTAGCAGCTCCAGTGGGTCAAGCTCTGACAGCAGTGACTCAGAGTGAAGTTGGACTGGAACAGAGCTGGACAAATGGACGTGGCGCACGCCGACTGCAGTGTCCCCTCCTATGGTTAATATACTTTCGTTCCATGGTGTGCAGGTTTTCTTTTACTTCAGTGTTATGATCTCTTCCAGCTGTGCTCCAGTAGGGCGGAGAGCCTCGCACATGCGTGCACCAGACCCCACAAGAGGGCCGAGCTCTGCAGGGATCCCTGCAGCTCGGGTTTAGTTGTGTGGAGACTGCGCCTGGGATGCTAACCTGATGGCCATAGACAGGGTGGGCTGGAGGCGGGGCTGGACCTGCCCAATCCCTCCTCAGGCCCAGCCTCTCTCCCTTCATAAATTGAAGGAAGCTTTTCAAGGGTATTTCTCTGGAATGGGTTCTGTGTTTCAAAGGTATTAGAACACTAACCAGCAGGTTACTTCTCTCCGCAGGGGCTGAAGACATGTGTCAGCCCATGGGGACCTACCCGGGCCCTAGTGGAGGGTCCTGGTAGCTGCAAACCAGAGCCTCATGCCTGTGGGTTGGGCATGGAGGAAAAGGGGTGCTGAGTTTTCTGGTCCTTTGGCTGTGTGTGCAGCGTGCAGATTTCGGAACACCGAAACTTTTACCTCAACTTAAGGGAATAAAAACAAACAAAAAAAGATTAAAAAAAAAAACTTTTTTGTAAATTCATCCATTTTCTACAGAAGTCCAGCCCAGCGTCCCCACTTTGCTAGCGCTGCCCGGCTGTCGTCGCCTAACGCTCTGAACCACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681:ENSRNOT00000065867:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAGAGGAGCTAGCTCAGG
R:
TGGAGCACAGCTGGAAGAGAT
Band lengths:
353-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]