HsaINT0018488 @ hg38
Intron Retention
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr9:134030305-134034829:-
Coord C1 exon
chr9:134034701-134034829
Coord A exon
chr9:134033706-134034700
Coord C2 exon
chr9:134030305-134033705
Length
995 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
CCCTGCCCATGTCTCCACAGAGA
3' ss Score
11.13
Exon sequences
Seq C1 exon
CAGCAAGCGGGAAGAAACAGGCAGCCAAGTCGAAAGAGGAGCTAGCTCAGGAAAAGAAGAAGGAGCTGGAAAAGCGTCTGCAGGATGTCAGCGGGCAGCTGAGCAGCAGCAAGAAGCCCGCCCGGAAAG
Seq A exon
GTACCGCTGGCGGCCGCTGTGCCACCCCTCTTTAGGGGGGTGGGGGGTGTCAGCAGTAGGGGTTTGAGCATCGAGCAGGCCCACGTCTGAGTGTGGCTTACCTCCTGATGAGCTCCATGTTCTTAGACGAGCTCTTGAGCTCCTGAAACCTCCATTTCCTGGTCTGTCACTGGGGGTCATACCCCAACCCTGCAGGGAGGTGTGCACATGTCAAGTGTGTGTGAACACAGCCCATTCCAGGGCACCACAGACAGAGGACCCCCCAGGAGAGGGCTCTTGTGGGGCTGGACTGGGCAGCCCAGCCAGTGAGCTGGGCTCACCGTGAGCTTTCTGACTGTTCCCTGGCAGTGGCATCAGTTCCATGGCAGGCCGAGGTAGCAGAGGCGGGAGGCCCAGCCCCATGCCCTGCGCTTTGCCAGGTCCTTTGCTCAGGGGAGCCAGCATTTGAGCCCTTGCCTCCTTTTTCTGGACCCTGTTAGAGCACACATCTCTTTTCCTGGCTTCCAGGACACACATATGGGGGGGACAGTAGGGTCCTATCTGGACTGGAGCATGTTCTAGCTGGGGGCCATGGCCTTGCGACATGGTTTGCCCAGTGTCGAGACAGGGCCCATGACCCTGCCCGCTGAAGGGGTCTGTCTCCTGTAGTCACTCTTTGGACGCCCCAGGCAGAGTAAGCGCTCCAGAAACGCCAGCAGCTGGTGTTCCTGTCGCTGCTGGTGGCCATGTGACTGGTGGATGTTTTTGATGGGCAGCCTTTCTCGCATCCATCATTTCCTGTTAGTAGTCTGCATTCATTTTTTTCCTGTCTCAAGTATATTCAGATAGTCTTGTTGACCTGATTAATTTCAATAAATACTTATTAAACGACTGGGTCAGGAAGTGGGTGGGTCGTGGCACCCAGTGTGATGGTGTCACGCTGGCATGGACGACATGCCGCCAAGCGGGTCAAGAAGCGGGTGTGCGAGCGCATCTCCCTGCCCATGTCTCCACAG
Seq C2 exon
AGAAGCCCGGCTCAGCACCCTCAGGGGGCCCGTCCAGGCTCAGCAGCAGCAGCTCCTCCGAGTCTGGGAGCAGCAGCTCCAGCGGGTCCAGCTCTGACAGCAGTGACTCAGAATGAACTGGCTTCGGACAGAACAGGACAGATGGATGTCGCACACGCCGAGACTCTGCCGTACCCCTCTGTGGTTCATATTACTACTTCTGTTCCATGGTGTGCAGGTCTGCTTCTTAATTCAGTGTTATGATATCTTCCAGTTTTTGCTTTCATAGGTCAGAGATCTATCTTGTGTGTGCGTTAGACTTGATGAGAAGGTGTGAACTCTGCAGAAAGTCTCTTCTTCATCACTGAATTCAGTCACTTGGAGATGACAACTTCAAATGCTAACCCGATGACCCCAGAAAACCGTGTGAGATTCGTACCGAAGAACCTTGTGGAATCCCTTTGCTTAGGCCCAACCTGGTCGATAGCTCGAGAAAGAATTTTTTCCAAGGAAATGTCTCGGATATGGGTACTGTATTTGAAAGCTGTTAGCTTTGTCAACACGCATTGTCCTTGTCATTTGGGCCCCGAGCTCTGACCCTCGTGTCTGACGCGGCCACCTCTTTCTGGAGGGGCTGAGGACAGATGTGCCTGCTTGTGGAGACCAGGCTGGGCCTAAGCGAAGGGTCATCGCAGCCCCAGCCCGGAGCGTGGAGCCCTTGGGGGGTGGTCGGGTGGGATGTGCGTTCTCCGCTCGTGGTGATGTCAGGAGCTCCTCGGAGGGAACAGAGCGGCTGTGTATGCAGCCTGCAGGTTTCCATACACTGAAGCTTTTACCTCAACTTTAAAAAAAAAAAAAGAAGAAAAGATTTAAAAAAAAAAAAAAAGGAGACTTTTTTTGTAAGGTTCGGCAATTTTCTACGGAAGTCCAGCCCGCTGTGAGTCCCCGCCTGGCTAGCGCTGCCCCTGCTGCTGCTGCCGCGCCACCCTTGGGAACCACTTCCCGAGCTTATGTGTATATAAATAGTTATTTATTAACATCATTGGTCATTTTTAAAAAAAAGAAAATAAGAAAAAACCGCAGAAGAAATGCATTCACACAGTCGCAGAGATGCAGGCCTTGCCAGTGGTGTGCCGGGCGCGGGTCCTGTCTGGCGGCGGCCTGTCGTCTCCAGGTGCTAACTCCTGCCACCGCGCGGTGCTCACCCACGTCTGTTCGCGCGCTCGCCCCTGGGTTTGTTGGGTTTTTTGGTTTTTTTCTTTGTGGTTTTTTTTTTTTTTTTTTTTTGTATGAAACTTGGAGGCTTACAGGTATAGACAGCTTTCAGCTACAGCACATTCTAATTTTTTATTTTGTTTAGTTCTTTTGTATTCACTTCTGGTCTCTTTAAGACTGTTTTAAAAGAAATCAATTTAGGGAACCCCAGTTATATAATATAAACTTTGTAATCTGAGAGAAAAAATGTATAGTAAATCTAAGTCTTGATTTTTAACTTTCTATTGTAAAAAATAATAATATACAGAGTTTAATAGAAGGTGATGTTTTGGTTTTGTTTTCCCAGAGGCTGCCATATGGTCTTTGAGTACGGGGATGTCCCAAACTGGCCCACCAATGAGCATGGCGGCTCCGGCCAGGAATGCCAGAGTTAGCCTCCCAGGCTTGCGGGTGGACATGCCTGCTCCCTGCCAGCCTCCAGTGGCCTGGCCAGGCCCTCCCGAGCCTGTCTGCCCTCCCCAGGGGTGGAGGAGTCTCTGGGCCCCAGGAGGATTCCCTCCCGGAGACTCGCACGGTGCTCCCTGCTCACGCGTTGTCACAGTTAGTCCGGAAATGACTGAAACCAGGCATTCTCCCGGACCTCAGCGTGGGGGAGCCTCCAGGCAGACGCTGGGTATGGAGCTGTGGTGTGGTCTGTCCTGTATGGTGGCCAGTGCTTTCTGCCAGCATTTCTGGATGGATATAGGGACTATCATTAGTATCCTAATACACGGTGATTTTAAAACAACCATAAAATTGATTCAGAGTCCACTGACCCTTACAGATGTAGGTATACCCTTACTGGAGAGGGAACTCTGATGAGGAGATGCTGGTAAATTATCATTTTTTAAATTGCTGGTGAGTCTGACACTTGGTGAGTTTTCAGCCAGTTTGTTAAACTTTTAATTAAGTTTTGTTTATAATAAAAATATAAATGGATTTGAAAGTTTCCATTTTTTAAAGTTACCCTCGTTTTCAAAGGTATTTTCTAAACAGATCTTTAATGGACTATTTAAACCGAATTTAAGGAATTCACACACGACAGTTGACAGGTCTTCACGCAGGCTGGTTGGTAACGTGCTGCCAGCACAGGGCTGGGTGATACGTACACCCTAAGCCGGGGGTGCCTGGGGCTGGGGGGCGCTCCTTGCAATGCCCCTCCAGCCACAGGGCAGTGAGGTGCTGCCTGTGTGAGCCGTCGGGGGAGCGGCCGGCTGTGGGGGCAGCGCAGCAGGAGCATCGTGGGGCCTTTCCTTCTCGGCTGGTTCTCTGTGACGGTGGCGTCGGCTCGCCTCTGCTCCTTTCATCTAGAAAGAAGCCACTGACCCTGACAGCCCACGGCGGGTACACTGAGCAGCTGCATTGGTGCTGTCACTTTTTTAAGGCTTTCTGTCCAGACTTCAACACTGGTTTCTTTTCAGAGTTTCGAAGGATTAATGACTTCCTCAGCGCCCTTGCTGGCGGGCTGAGGGTGACAGTCACGTCCGTTTCTTCTGTATTAGAAGGCTGCGGTGATTCAATTAGATTGTCCCACTGCTGAGACCTGTAGGGCAGCTTCTAACATGCTTTTTTCAAGGGGAGAGGAGTAGTGACAAGTCGTGTGTCGGAATTGGATTTGAGAACACTCTGAATGACCCCTGGAGGCCGAGGGGGCAGGCTTCGGGCGTGAACTGAACTCCAGACCCCTCTTTGTGTTGGGCAGTGTCATCTTGCTTACAAACTGTAAGACACATTTTTTTGTGTGTTTGTTTTTGTTGTTGTTCTTTTGCAGCACTCACGCCTCTGACAGTCTTTTGGGAAAGAGTAACACCCACATACAGAATTTGTCACATCCAGAGTAGCACTGTTCCTTAATACTGGCATAATGCTTCCAGGAAGTTTTTCTTTTTTATATTTAAAATGTTACTTTTCTGTATGATGTGCATGCAAGTTTACCGTAACTTTTCTTAAACTTTTTAGTGCCGTTTCTAGTATATTCCTGTAAATGTCAGTTACTGAAAATGAGTCCAATGTAAGTAGTTTAGCTTGTTTATTGCAATGCTGGCCTCAACACAACAGAATAAAAATGGTAGAAAGTACTCTTTGATGTTTCTGGTAATCATGGACCCTTCTCCTGGGGCATTTGTTTTGTTTTCATAATAAAAAGCAAAAAAAAAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925:ENST00000303407:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF084185=Pol_alpha_B_N=FE(37.4=100)
A:
NA
C2:
PF084185=Pol_alpha_B_N=PD(32.2=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAACAGGCAGCCAAGT
R:
CAGACCTGCACACCATGGAAC
Band lengths:
342-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development