DreINT0040160 @ danRer10
Intron Retention
Gene
ENSDARG00000001881 | cacnb3a
Description
calcium channel, voltage-dependent, beta 3a [Source:ZFIN;Acc:ZDB-GENE-060221-2]
Coordinates
chr23:14412943-14415526:+
Coord C1 exon
chr23:14412943-14413113
Coord A exon
chr23:14413114-14415479
Coord C2 exon
chr23:14415480-14415526
Length
2366 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CATGCCTGACATCTTTGCAGTTC
3' ss Score
6.67
Exon sequences
Seq C1 exon
GAGATGTTTGATGTCATTTTGGATGAGAACCAGTTGGAGGACGCCTGTGAGCATCTGGCTGAATATCTGGAGGTTTACTGGCGTGCCACTCATCTGCCAGGCACCACCCCTCTCAACCCGCTATTGGAGCAAAATTTGATGACCCCACCCTCTGCAATCTCCAGTCTACAG
Seq A exon
GTAAGGTGGAAATACTGAGTGTGTTGTTTTATTTATACAGTTGATTAAGATTGAGAAGATAGGTTTGTTCTTTGGCTCTCAGGATGTTCCAGCAGGCACTGCGCATCATCATGGCATCAGATTGATGTTGTACCCCAAGTCATGGGACATTGCATTTCGTTTGTAAATGAACGTTAGAACCCGACGTCCGGCCGACATCAATGTCCAACGTCAGACAGACATTACATTTTGGTTACTTTCCAAGGCAACCTAAAAACAACAAAATATCAATGTCTAATCATGTTGACGTTATGTCATTTTGGTTGCCTTACCTAAAGTCAAATGTCAGTACATGACGTCAATATGACGTTGGTTTAAGATGTTGACTTGACGTTGGATGTTGGTCACTTTCCAACACAATCTAAACTCAACAAAATATCACTTTATGTCATTATTGACCATCTAAATAACATTGTCCTTTAGTTGCTGGTGTCCTAAATCTAACCTAATATTAATGTCTTATGACGTTGTGTCCGCTGGACAATAAAGTCATTTGTGAAACTAGTGTAATGATTTGATATCGGAATCTAAAATGTATTTATATTCTGGAATTAGATGCTTAATGCTGCATTCACATCGGAGGCGAAAAAGCGTCAAGTGCGAGTGATTTACATGTTAAGTCAATGAAAAGATGCGAATAGGCATCCTGCGCCTTAACAACATTGATTTCGCGATTGACACGTTTGACGTGCATTTCTCACAAATCCCTCGAGTTTGAAAAAACTGAACTTCAGCGGACATTTGTGCCGCATTAACCAATCAGGAGCTTTCTCTTGTAGGGGCGTGCAAGAGATCCTCCTGCCGAAACCTGACAACAGTTGATCAAACTGTGCTTGCCTCAGTCTGAAGCACGGCTGAAAGCTTCCATCATCCAGGTTAAGTTTCTGGAGGAGTTGATGAACTCACAGAGCTGCTGCACATCTGAGAGGATCTAGTGAACTCAGACACGGCTCCAAATGAATTGACGCTGTTTTTCAGCCTTCATAAAGCACATAAACACGGTTATTCTCTCAATAAAATCCATGTCAGCCATTTAGCAACAAAGCTAGAGTCAGCCGGCATACAGAAGCCCTGCCCATGACTTGAATCTGTGAATTGTGAATTGATTTTGATGCTCGAATGAATTGAGTAAACTCAAAATGTTCATGCATCTATTTATGCGTCTGGTGTGAAAACAGCATAAGGTTAGGAAGTGGATACTACTTAGATTCTAAAATGAAAATGAAAAATGTCTGTGTGGCCTATCCTGTAAATCTAAAAGTGCCTTGAATTCCATTTGTTGCTCTCAGGTTTCAGTAAAACATAGTTAACATTGTTATTTTATTATTCCACACATGATCTTACATTTCTTTATTTAGTTGCAGCCAACAAGTTTTTTTTTTTAATACATGTTTAAGTGTATTAAACATTAATCCAAAAATCTGAATAATCTGCATTTAATATTTAAAACCAACAAATGAAAATTTTGGAAGCCAGCAAGCTATAAGAGTTGCAAAAAAATATATAAATCCGAATAAACTACTACATTCAAACAATACCCAACCCTAGTAATTACAGTACATCTAAGGCAACTTATTGGTATATTAAATTCAAATTTCCACCAAAATACATGACCATACTTAATTTAAAAATGCGGATGACTACATTCTTTAAAAGGAACAAGGTTTGCAGTCTCAAATGCACTGACCTAGTTAGACAAGAAGAAACCAGAAGTAGTACAGTATGTGTCTTCATCGATCAGCCAGAAAAGTAGTCCAGAGACTGTGCTAAACATTATCTTCTAGAATATGGATGGCATTTCAGCTTTGAGAAATAATCTGGTACAATATGTGTGTGATGTCTGCATTCCCCTAATTCAAAACCCTTTCTAATGTATTTAAATTACACCGCTGACCGTAAAACCATAGATGTATGGGATTTTATGAAATCATTTTTAGTTTTATAGAAGAAAGGCACTATTTAACTTAAATTTGCAAATATTCATATTTTGGGGACTTTTGGAGCTCCATGCACAGTATATTAAAATATCTCTGTTCTTTTTGTAATAATTTCATGGAAACACTAATTAGTCAGACCTACTTTATATTGAACAACGTTAATGTCAAACAACAAAACTAAAAATGGAAGAAAAAATAATAATAATAATAAATTCCCAACCTGAAAGTGGCCATACAGTAAATGTTTGTCTGTTCTGTCCTTCCCTGTGCTCCATATTGTCAATCTCTGTCCTTTTAGTTATCTTGGGTCCACAGATGCTTGTAATGCTGACATGTTGTAAGTCTCAATCTGTCTGTTCTGTGTTTCATTCATGCCTGACATCTTTGCAG
Seq C2 exon
TTCTCTGAAACACAGGAATTAATTGAATGAGCACTTGCAAACCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001881:ENSDART00000087280:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(14.0=43.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]