RnoINT0028245 @ rn6
Intron Retention
Gene
ENSRNOG00000054274 | Cacnb3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:RGD Symbol;Acc:2248]
Coordinates
chr7:140322864-140324902:+
Coord C1 exon
chr7:140322864-140323013
Coord A exon
chr7:140323014-140323610
Coord C2 exon
chr7:140323611-140324902
Length
597 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
AGCTATTGTATGTCCCCCAGAAC
3' ss Score
6.54
Exon sequences
Seq C1 exon
GAGTCATTTGATGTGATTCTGGATGAGAACCAGCTGGACGACGCCTGTGAGCACCTAGCTGAATACCTAGAGGTTTACTGGCGCGCTACCCACCACCCAGCACCGGGCCCCGGGATGCTGGGTCCGCCCAGTGCCATCCCTGGACTTCAG
Seq A exon
GTAGCCATTTCTTTTTTTTTTTTTTTTAAAGATTTATTATTATATATATAAGTACACTGTAGGTGTCTTTAGACACACAAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTAAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAGGTAACCATTTCTACTGGGCAAAGCTCCTGGCTTGACCGAGGATTATTCTCAGTCTGTATGTGAAGCCAAGGGACACAGGCCAAGGGACTTCCTGTCTGGACAGCATGGTGACTGAGATTAGAGCTGGTCCTCCTAGGGTCCAAGGAAACACCCCACACCTTTCTCCCAGGCACTTTTTAAGGAAGAGCCTGAATTTGTAAGGAGCTAACAGTCCAGCTTTCTGCCTCTGGCCTGGAAAATGCCCCAGCTTACTCCTTCCTTGCACTGTTCACTCTTTTAAAAACCTAAGAATCAAGACTAAGGGAGGAAGAACCCCACCTCCCTGCCAGAGTCCTGGGAGGAACAAAGGCTAGACCTCCCTTACCTTACTTAGAGCTATTGTATGTCCCCCAG
Seq C2 exon
AACCAGCAGCTGCTGGGGGAGCGAGGTGAGGAGCATTCACCCCTGGAGCGGGACAGTTTGATGCCCTCGGATGAGGCCAGTGAGAGCTCCCGCCAGGCCTGGACCGGATCTTCACAGCGCAGCTCCCGCCATCTGGAGGAGGACTATGCAGATGCCTACCAGGACCTGTACCAGCCTCACCGTCAACACACCTCGGGGCTACCCAGTGCTAACGGGCATGACCCCCAAGACCGGCTCCTAGCCCAGGACTCGGAGCATGACCACAATGACCGGAACTGGCAGCGTAACCGGCCTTGGCCTAAGGACAGCTACTGACCACCTCCTGCCCTACCCTGGCAGGCACAGACACAGCGGCTGGGGTGTCCACCTCAGGCAGGTTGGAGTTAGATTGGCGTTAGGCTGCCTCTAGGTTCAGCTCACACAACCCTCTGCCCAGCCCTAGGTCCAGGGCTGACTGTGGTCCCAAGGTTCTGGGAGAAGCAAGGGGCCCCCTCACCTCCTGGGCACAGTGACCCCGTAGGTTCTCATCCAGGTACTAGCTGTGTTCTGCATCCTTGGCACCTTCCCCTGCATAAGAAGCTGCCCCGGTGAGCAATGATCTCAGGCCGGGATCACTTAGCAGGGGTCTTCCAGCCAGAATGGATACCCCTCTAAACAGCAGGAGGGTGTGAGTGCAGGCAATGTAGCATGAGGAAGAGACATGGTTCCTGAGCAGGCGTAAACCCTAAGCAAAGGAACTCCGTTCACGTCACTGCCGCACATTAGAAATGAAGCAATCAGAGCTCAACATGGCGGCACTTCTATCCCATCAGCTGGGGTGGGCACTTACACCTAAGACAGGAGCAGTGCAGGTGAGGCAGGACAGACAGCTCATGGCTGTAGCTCTGTTAGAGAACGGCCCTCCTCACCAAACCAGGAAGCTTAGCATCTGGCAAGACTAGGGAACTGGGGCACAGTCAAGCCCAAAGCCGGCCTGGACTGCGGGGAAGGGGGAGCAGCTTCCAGCCCCCCCACCCCCCTTGCTTTCCTCATTCTTTGCCCTTGCGTCTGTCATTTCTGTTCCTTCCCTCCATGCCTCCTGCAAGATAGGGGCTCCCTGGCTCGTAGCTGCCACTTGTTAAGTTAGGGTTAGATGAGAGGAACAGACACAATGAACAGCCCCAGAGGCTGTCACCTGGCTACCCTTGCCTTATGGCTCTAGCGTTTGACCTACAGAGCATGCTCCATTAAGAACCCGCCCCACCTCATTGTCATCTCCAATAAAACATAACGCACAGTCCCTTGGGTGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054274:ENSRNOT00000081206:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(13.8=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGGTTTACTGGCGCGCTA
R:
TTCCGGTCATTGTGGTCATGC
Band lengths:
358-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]