GgaINT0045685 @ galGal4
Intron Retention
Gene
ENSGALG00000012511 | CACNB4
Description
voltage-dependent L-type calcium channel subunit beta-4 isoform c [Source:RefSeq peptide;Acc:NP_989675]
Coordinates
chr7:34829344-34833573:-
Coord C1 exon
chr7:34833388-34833573
Coord A exon
chr7:34829605-34833387
Coord C2 exon
chr7:34829344-34829604
Length
3783 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
GGATTCTTTGATACTCGTAGAGC
3' ss Score
3.2
Exon sequences
Seq C1 exon
GAGATGTTTGATGTAATTTTGGATGAAAACCAGCTCGAAGATGCTTGCGAACACTTGGCGGAGTACCTGGAGGCGTACTGGCGTGCTACGCACACCACCAGTAGCACACCCATGACTCCTCTTCTCGGGAGAAACTTAGGATCCACTGCACTGTCCCCATACCCTGCTGCGATCTCTGGACTGCAG
Seq A exon
GTATGAAAACACATTTCAGCCCCAAACAGCAGCGCAGGTCAGGTATCTTGTTATGTTATTGTTAATTCTGGGGGGGAATGGTGTACGTGTTGTGTACAGCAGAAGTCATATGTGCTTCTGTGTCAGCTGTTTGGCCACAGCCAGCAGCAGGAATGCAAGCTGGAGGCCCGTAGTCAGCACAGACACAGCTGAAGCACTGGGACAGCTCCGGCTTAAGTGGGAAATGCAACAGCGCACGGCGCTGTCAAGTGCTATCGTGGCCATATTAAAAAATGGCATTGTTTTGATGTGGAAGAGATGCCGTTGGCAGCGGGATGCTCTCAGCTTGAGAACTCGCTGTGGCACAGCAATGGAGCTCCTGGCTGCCGTAGCTGGGAGGAACAGTTTCTCTGATGTCCCATTTTCTTACTCATAACTCCACAAAGCATTCGCATTTGGGTGGCCAACATCCATGCTTGTCTCGTGTCAGCAGAACGCCTTCACCTTTTGAGTTCTCTGAGTGTGAAGAATTTCCATTTTTTTAACCCATTGAAAAAAAATTCTGACCGTTTTTCTTCGCAGGGGTAGCTCAAAAACGGCTGAACTTTGGCACTTCAAACGTGGCATGTAAATAGTCCTTAACGAGAAGTACGTGCTTTACTAAGTTTGAAAACAGAACGTGTTGTTGAAGTGATAGTTGTGAATGCTTGAGAAGACCAGGACTGTAGCGAAGTCTGAGCGTTTCAGAAGGTGCTCTGTGTGTGTGTGACCTCACAGGGACGTGCACCTTCTAATGTATGTCCAAAGTAGATCGAGCAAACGGGATTTGATGAATTATTCACCTGACAAATTTAACCTCTGTTCTGCTTGTAGAATGTCTGGAAGCAGGTAACACTCCTGAAGGAGATGACTCACTGTTGAGTGTTGCCATTGAAAATGAAGCTATTTTTTCTGTGGGTGAATGGCACTTCGTGAAGGTGCATGGTGTTCGGTACTCACCTTTCTAATGATGTGCTTGATTTTATTAGGCTCAGTAAGCCACTGTTTCCTGACTGGCTGAATGCACAAGCACTGTTCTGTTACTAATAAAGCACACGTGTAAAATGTTGTTTCCATTTTCACTTGCCTTAAGATTTCAGTTTTCCATCCCGTCATGACAATAAAATACCATCTGTAGAACTGTCACCTCTTCAGTTTCATTTTGAAAACTGGGTGTATCCACAGAATTTTTTTCAGGCATTTATTTCTCTCTGATCAATGGACACCAGCAGTGACTGTGAAATGTTGCTCCATTTACTTAGGGAAAACTCACACTGAAGATGAAAATCACCCCTGTGCAGTGGGCTGGCTGAAGGTATGCATCACCTAATCCCCACTTCACCCTCATTGTGAAGGCTTAGCTGGGACCTGAATGGTGCTAGTTCTCTGCAGAGGGGTAAATTTCTCCCTGAGTGAATGGTGCCCAATTGAGGACTGCAGGACGTGGCTCTCAGTGCTACTCCAGCACTCAGGCCCATTTCAAGAATCTGGGGGTTTTTACACGGTTGTCTTGAAGACTTCCACCACTGGAAGTGCTTACCCACCGAGAAGGTGTGTGCTAATTCCAGCCTTTGGAAGCATTTGCTTCAGCTGTAAATGTTGTGATGTCATGGTGGTGATTAAAACCCTCACTCAAATCCTCGAACCAAACTAGCTTAGGTGCTGATGGTAATTTAAGAATTTATACTTCATATGGCCTGGTGACTCCTCCTCTCTTGATACCTCAGGAAAGCAAATACCAGAAGCCCCAAATACCAAAAGCCCCCAAGCTTTTTACAGCAGTCATACCTGAAACTGATGCAGATTTGCTGGGGCAGTCTGTTCGTGTTTTACCCAATCAGGATTTGGGAATATCTCTTTTTCACTCAACTGTCACTTGGAGTATAACTTACTGTGATTGAAGCTTCTAATTTAATTTGAACCTTTGGGCTTCATGAAGGTCATTAGGGTAAAGTTGGCATATGTACAGCAGAGTCATAGTAAAAAGGAGGCTGAGCCCAGCAGCTCCAGGTGTGTCCCATTACAGGTGTGTGGTGCACCTTCCAGAGCCTGTGGCCACTCGGTCCTTGGCTGTGAGCTGCTCAGCAGGGAGTGATGGGGGTGCTCACATGTATTTGCAGGCCTCAGCAGGATGAGTAAATTGTCACTGCCAGCTGGGGCCAGTGGTTAGCCTTTGTGGTTTCTATGTACCTATGTAGTTCATCCTAATTCTGGTGAATAGACTTGCATCCTGCAGTTCAGGTCTTGGGGATAAGTGCTGCTTGGGCTCCAGAGGCATTTAAAGTCAACTACTGAAGGCAGTGTCATGCAGACAGTGCTACCAGATCAAATGTAATTTGGGGTATAGCACCAGCACGTAGCCACACCAGGTTTATGCCGTGGTTACACATCTCAGGAGGGAAATAGTGGGGTCAGAATGACTATGCAATCGTAATAAAGACCGAAAGGTTTTAAGAAAAGAGCAGTTTGCATCCAGAGAGGAAATTGCTGCAGGGAATGAGGAGAACATGAGCATAGGAAGTTAAAGTTGCAGTTCACTAGTGAAGAAAATATGTGGACTTCGTCATACAGACACTACTAAGGCATGATGCTGCAAGGAAAACTTGGGGAAGGCATTATAGAAGTTGCTGCCCTGTAACACAGCACAAATCTGTAGATGAGCAGCTTTTCTGTGTCAGCTCACTATGTGGAGTCTCTCAGTGGATAACCTTGGTAGCATCGATCCACATCGGGAGACGAGACATCCTATCTGCTGTGCTGTAATGTACACCTGTCTGCAAGGTTACTTCCCCATGCAGACAAGCCTTTGGTTATAAATTATGCAGTTTAACAGTTGCCACAGAGAAGCTGTAGTAATGGGAGGAAGGTTTTAGAGCTTGGAGAGCCTTGCCCAAGATTTTAGAAGGGAGAGGAGCGGGCAATGCTGTGTGTGCCTGTGAAACTGAGGCCACAGGGGTGCAGCCATCACAGCAGCGTTCTGCTGGCACTGCCAGGATCAGAACAGTGACTCTGGGTCTGTCATCTCGGGAAAGGAAAGCACAGACCACGTTTGTTCAGAGAGCTGTACGGATGAGAGGCTTAATGTGATGGCAGTAAACCGGATTGTTGTCTGCATAGACCCCTTCATTGTGCTAGTTCACGGGCAAAATACATGGACCAGTTTTTTTTATGTCACAAATGTAATAAATCATTTTGGGAATGTGAGGATAGAAAAAGCTCGTTAACTTACTTAAAATACTGTATTTTAGCTGGAAGAATTTGTTAACATTTTAACTATCCCTTTGCTGCCCAGTTAGCTGCTGTCACTTGTTGGGTCGTGTGAAGGTTTTTACAGAGAGCTCAGAGAGCTGAACCTTCAAAAACAACAGGGAAAAAAACCCTCTTCAGCTGCTTTCTGAAAATCCATAAACCAGTGACAAACTATTTCTAAGCAGAATAGAAGCATGAATGTTAGTATGTTCATGATCAGAGAAAGGTGATAAATGCTGAATACATCAGCTCACTTTTCATGCTAAGCGACCTGTAATATTTAAGGTGGTGAATGCCGTAAGATACACGCTGTAATACCGTGTTTGGTCTGCTTTCAGCTCTAGGAACCAAACTATTCTTGCAACCCATTCCTGTAAGCGTACAGGTTTTAACATAGAATGAATTTCACAAAAGTGGATGGATTTTGAAAGACCTCAGAATAAAGTTTCAAAACTAGCTTAACAATGCCAACTACTCTTTATCTGTGCTAACGCTTGGATTCTTTGATACTCGTAG
Seq C2 exon
AGCCAGCGTATGAGGCACAGCAGCCATTCTACAGAGAACTCTCCAATTGAGCGACGAAGTCTCATGACCTCAGATGAAAATTACCACAACGAAAGGGCTCGGAAGAGCAGGAACCGCTTGTCTTCCAGTTCCCAACACAGCCGAGATCACTATCCTCTAGTGGAAGAAGAGTACTCTGACTCATACCAGGACACTTACAAGCCCCATAGGAACCGAGGATCCCCTGGAGGATATAGCCATGATTCACGACACAGGCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511:ENSGALT00000020437:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(13.8=40.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]