DreINT0040184 @ danRer10
Intron Retention
Gene
ENSDARG00000009738 | cacnb4a
Description
calcium channel, voltage-dependent, beta 4a subunit [Source:ZFIN;Acc:ZDB-GENE-080320-2]
Coordinates
chr9:38315684-38319564:+
Coord C1 exon
chr9:38315684-38315869
Coord A exon
chr9:38315870-38319286
Coord C2 exon
chr9:38319287-38319564
Length
3417 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TATCTGTGAACTTTTAACAGAGC
3' ss Score
6.46
Exon sequences
Seq C1 exon
GAGATGTTTGACATAATTTTGGATGAGAATCAGCTGGAGGATGCGTGTGAACATCTATCTGAATATCTGGAGGCTTATTGGCGCGCAACACACACTTCCCTTAGCACTCCACTAAACCCTCTGCTGGGCCGCAATCTGGGCTCCACTGCACTCTCACCGTACCCCACAGCCATCTCTGGACTACAG
Seq A exon
GTGAGACGAGACACAGCCAGAATTGTAATATTTTTCAGAATGTAAATGTTTCTATCGTTTTGACCCATATAACATTGTATTTTAGTATATATCCCACCAAAATTCCAAACAACAACATAAATATGTGGGAATAAATATGCAAATGAAATGAATACTGCATTTAATTTGGGTTTAAAGTGATAGTTCACCCCAGAAATTAAAATGTTTTCATCGTTTACTCACACTTGTGTGCACTGTAAAGATATTGCTGTAAAATTTACCATATTACTGCCAATTTTGGTGTTCATTTTGCCAGTAATACTGTAAAAATGTACAATCACTCTGTAAATTAATAATTACTCAACTGTAGTTTTACAGCACAATAGTAATTGTTAATTTACAGTGGACTTGTAAATTTTACAGTATTACTGGCAACCAAAAATGCCAGCATTTGTCACAGTGTGGTCCTAAACATTTCTTTCTTCTTTTAAACACAAAAAATATACATTCTGAAGAATGTTGGAAAACTTACAGGTACATACATTGAATAATCAAATGTAAAAAAAAAACTCTATAGTCAATGTATTATTTTAGTGTAGATTAATCCTTTTATAAAAAATATTTAGTCAGGAACAATACATTTTCATTTATTGTTTAGCAAAGCCTTTTGCGAATATCAATTAGACTTCAATATATTGGGTAGCTCTTTTTATAAACACCATCTTTGGAGGTCTTTACAGAACATCTCACAGGAATAAACTGTCATATTTTTTGCCACTGGACAATTTTGTCAGTGTTGGAAACAAATAAATGATAAATGAAGAGAGAACCCAGTCCAGGAGACTTGATAACAAGCAGAATTCCTTTCTTGAGATGTGTTGGTTAATCTGTAGTCATTCACGAAGTCCATGAGTCTGCAAGAGCCTTTCAGGAGTCTCTTACAGATCTGCAGTCTGCGAGTTTTATCATAAGTCTGTGAGCAAGTCTTAAAATTAGTCTATAATATGTTTTAGGAGGAGGGGAGGGGCTAGGTGGAGATGGCTAACAAAGCATGCAAATGAAGTAGGTAGGTAGGTGAATAAACTTGCCAAACCACTGACCACATAAGTTTATCAACAAAAGGGTTTCTTTGGCCTGAAATGATCAACTGAAGACAAAGGCACCGTCGTTAAGACGCTGGTAAGACACTGGCTCAGCCAGTGCTTAGGAAGCCAGATGTTTGTAATGTTTCTTACACCCTGTCTATAATTAATTAGATAATTAAAAATAAAAGAATACAACTTTTTAGTTATATATAGATTATCGATCATTTGAAACTAGATTATATACATTTATATTTCCACAGTAACAATTTAGAAATGTAACGCGTGAGGAACGCTGTACAAAGGAGTTGAGGAGCCACGTGTATTTTATTACAAGAGTGGTCAGGCAGGCAACATTCAAACCCAGAAGCAAACATGTACATGCAGGCAATCCAAAATCATGGTCACAAGCAGGCAAATGGCCGGTACAGGTAGCAAGGAATCAAAACGAGAGAACAAGGCAAAGGGTCAAAACAAGACTAGGCTAGACACAGGAAAGTGTCATAATGTTCGCAAACAGTTAGTTTTAGGTCGATAGAAGATGCCATCGTCCATCACCGATGCCCGATAGACATCACGATGCTGAGCCGGCATCGCCATCCTCAACCCTGCCCCCGTCGCAGCAGCAACCCACTCGCGAAAAATACACACGTAGGCCCCGTTTACACTAATGAAGGCATTTTAGTACAAAAACGATCCACGTCCACACTGGCATTTCATCCAGCCTTTCTGAAAAGATCTCCATCCACACTATACTGCTGAAAACACACATCATGTGACTAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAACACTCTGTCATGTGCTGCAGCATCTGAGCTCCAGCAGTTAGCCCAGAGAGCAGTGCACATCGGACAGTTTATCAAATATTTACCAGTTACCACTGGATTGCATCTCACTATAGTTGTTGAACAAGATATTTAATTCATCTTGTCTCTATCTAATGACTCTTCGGCCTTTTGAATCTATCAGGTAATGTGTGACAGTGTCAGTACACTACTTCAATCTTTCGCCTTCACGCTTGTACTTAGTAGTTTAAGCAAAAACCTCAGATACTTTAGGTTGGTTTCTGTTGGTTGTGCATGTTTTTTACCAACCAAGTTTGTTGACGCCGTTATAACGACACGGATCACTCTGCCTCACTCTGATCTATGCATCCCACAGTCCTGCGAAAAAAGTGATTGACAAGTGGTTATGGGTGTGTAACTTATCTTTATTTGTTTATGATTTGGTTATGGGTAAAACAAAGACCATGCGGGTCAGGTAGTTGAAACGGTAGGCTACAAATAAGTAATTTGTTATGAATTAATTAATTATTCGTAACTAATTAATTCACCGCTGCCTACGACGATGATGCCATCGTCCATCGCAATGTTTCACATTAGACATCGCACGATGCCAAATTGGTCGACAACGCCCAACCCTACAAACAGTATAACAAGACTCAGCACAGTGTGTGAAACTGATCAGTATATATTGACTGTGAAATCAGTCCTTGAGCAGCTCCCAGCTGTGAGTGTGTAATCAATAGAAAACTGGAACAGGTGTGTGTGAGGTGCATGACAGGATTTGTAGTTATTTTGATGGCAGATTTATAGCTCTCCAGCGATCTGTATGGACTTGAAAAGACAAGAATATATCTAAATATCTCTTTGTAATTCCTGTTTACAGCAAATACCAAGCTGTACATTATGTTCCTTTCTATTTGCATATCCCTGATTATTAATAGCAGCCTAAACAGTATGTTCATCTATTTGTAAATGTCTGATTCTTGCTAATACAACTTGTATATTATGTTCGTAGTACATTCATCTGTAAATATTACCCATAGATTTCTATAATTCCACTTATAATGGATAGATATATTCTGCACTTGCTGCTATTGCACTCCTGGTTAGACCTAAAATGCATTTCGCTGCCTTGTATTTGGACTTGTGTAATCACAGTAAAGTTGAATCTAATCAAATCTAATTATGACCCATTACATTATGTTAGTTAATGTATTTACAAACATTTACTAAGTATGGATAATCTTGTAAATAATTAATAGTCATACTGTAGTTCATAATTCACTAATGCATTATTAAAATCAAAAGTTGTGCTTGTTAACATTTGTTAATGCACTGTGAGCCAACATGAACTAGCATGATTTAACCTAAATAACATCAACTAACTTTAACAAAGACGAATAAATACAGTAATAAATGTATTACTAATTGTTTGTTCATTTTAGTAAATAACTAATTAATAGACCATTATTGTAAAGTGTTACAATTTTTTATCTGTGAACTTTTAACAG
Seq C2 exon
AGCCAAAGAAACAAAAACAGCAATCACATCACCGACAACTCTCCAATGGAGCGGCGCAGCTTGATGACATCTGATGAAAACTACCACAACAACGAGCGGCAAAAGAAGACCCACAACCGGCTGTCCTCCAGCTCCCAGCAGAGTCGCGACCACTACCCTCTGGTAGAAGAGGACTACCATGATCCCTACCCAGACGCCTACAAACCCCACCGCAACCGGGGCTCTCCAGGCGGCTACAGCAACGATTCACGCCACAGACTCTAAACATCACAATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009738:ENSDART00000123749:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(13.8=40.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]