BtaINT0030565 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44454626-44457832:+
Coord C1 exon
chr2:44454626-44454811
Coord A exon
chr2:44454812-44457571
Coord C2 exon
chr2:44457572-44457832
Length
2760 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
3' ss Seq
GAACCATCTGATATTTTTAGAGT
3' ss Score
5.24
Exon sequences
Seq C1 exon
GAAATGTTCGATGTTATACTAGATGAGAATCAGCTGGAGGATGCATGTGAACACCTGGGAGAGTACCTTGAGGCCTACTGGCGAGCCACCCACACAACCAGTAGCACCCCCATGACCCCCCTGCTTGGAAGGAACCTGGGCTCAACAGCACTCTCGCCATATCCCACAGCAATCTCTGGGTTACAG
Seq A exon
GTAGCGTCACTTCTGCTTTTACAACCTAACATTTAAGCTTCTATAGGAAACTCGATTGAGATGGAGACTGGGATTGTCCTGACTCTGAAGAGAGAACCCTGTACGTTACTATATCAAAAAGTCTAAAGCAGTGACCACTCATATAGACTATTTTACATTTTACACACTCAAATCCCTTTGGTTCATATACTTGCTATAAAGTATTAGCAAAAAACTTCTTCAGATTCGTATCTTTGGGCTGCATTGATTCTAACAGATGTTTTATACTTTTACATATACTATTTTACAGTACACTCAGAAAGCATTGGGCTTCCCTGGCGGCTCAGCTGGTAAAGAAGCAGCCTGCAGTGCAGGAGACCTAGGTTCGATCCCTGGGTTGGGAAGATCCCCTGGAGGAGGACATAGCAGCCCACTCCAGTATTCTTGCCTGGAGTATTGCCATGGACAGAGGAGCATGGTGGGCTGCAGTCCATGGGGTTGCAAAGAGTCAGACATGACTGAGTGACTAAGCACACTCAACACACACAGAACGCGTTACCTAGTCATGATCTATCCTAGACAGAGTTATCCAGAGAATGGCCTTTTCTTTAGAACTTTGTACTCTGTTCATTTATAATGACTTTTACTTAAATTCATCCCTCCTCTGCTTACACTGGTGGTCCAGTGGTTAAGACTCTGCGCTTCCAATGCAAGGGGCAAGGGTTCAATTCCTGGTTCAGGAACTAAGATCCCACAGGTGCTAGTGTTGGCCAAAAATGAACTCACCTTTCCTATGTCTAAACCCTGCTAAGAAACTTACTACCTACTAGTCAGGGGTCCATTCATTACTTCTCCACATCACTTCTTCAGGATTAGACAGTAGTGGCACTGTCAGGCACAGGACCAGCTAAGTGAGGAGGGATAGACGGACATTATGACCAATCTTACCTAACCCCGCCCCACAGGCTGCAGGGCCTGTCCGTGCGCAAACAGAATGCACAGAGTAGAATCATCTCGGTTGGAAATAGTGACAGATCTCTGAGTTTTCTTAGGGGTTAGCAAGGCCCACCTTGGCCATCACCTATGGCCTTTAGGGGAGTGGAGGATGAATGCAGGATCAGGAGGCTCGCTCTCTTGCTGTTCAGGTGCTGTGCTCAGGGCCAGACGTGGGGACCCAGAGGCATTACAATATGAAGTGAATCTGATATGAATATGAATGAATGATATATCATATGAATCTATATGATACCAAGCAGCTGCGGGAATGTGGCCAGACCCCCAGCTGACTGAGGAATGGTTGTCAATCGAGCTGTCTTGCATCATGACTAGTGTTGTATTAATAGGTTATAATAGTCATAATGTAGATCATGTAGAGTTAACTCTAAGATAAATAGCACTCTCTGAAATGTTATTACAACTCTATTACTCTTTTACAAAGCTACATCTTTGTAAGAAAAACAAAAAAAACTACCACATAAATAAATAGCTTTTGTGGCTAGAAATGAACTTGGGAAACATCCTATTATAATATGCAGTGTGTGTGTGGGCACTGGACTCTTTCTTTCCTTGTTTTACTGCCTGCATGCTGATCTGACTGTGGCACTTCCACTGACCAGTTAGAGTTGGCTCTGAGCTGTACATTGTGGGAGGAGAAATGGAAAAATGAAGCACTGTGATTCCACCTACACAAGTTGGTAGAGATGAAATGTACTTTGTTTATGAATATAACACTCCTGACTTAGCACCTCTCAGACATCTACCTGAAGTGGTTCCCCCAGTTTCACTTGAGTTAACATGGTGCCCTTGGTCCTGGGGCCAAGTTCTCCTAGTAACCATGGGCACTTAATTGTTAGACCCTAGTTGGGGCTAGAGGCAGAGGCTGTGACTGTTGAACGAGTTTCCTGCTGAAGGTGAGTATCCTTTAGAGAAAATATATCTTGGTCTTTGGTTTCATCAGTATCATGTTTCTTAACTTAAGAGGCAACCTACTTAAGCAGGTAGGCACAGCTAAGGATACATGTTTTCCTGAGATTTGAAGAAAAATGTTAATAGCATTTACTGAGCACTTAAATAAGTCACTGAAGATATTAATTTCATGTTATCAGAGAAATTTAGTTTATATTCTGAGGATTATTTTTCCAGGACATTTCAGTTGGAGGAAGCAAGAATTGTAAATATATCAGTTAGCTGGCTTCATAATTATTGTACACTTCTTTGAAGAGAATGTTACTGAGTCTTGCATTTATGTAGGATGTAGAAACAAATATTTTATGGGCAGTACAAATCATAATTTTACTAACATTTTTAAAAGTATAAGGAACATTCAACTAGATAAAGATAAGTGTGTGACTTTAGGAGAAAGCTTTTATCAGTTCAAGAGAGGAAGAAAAAATAGCAGACACTATTCTGAACTTTAACTTATTTTCCAATAGTAAAATAATCCTCATTTTTGCAATAGAAGTTGAATTATTAGGCTCTCCTAAATATACTAAGTTCCATTCAGCAGCTAACTTTCACTTTTATATTTTTCATAGGAAGCATAAGTATGCAGTGTTATGTAATTAAAATTCACAAACTACCAGCACTTTAAGCCTTTTCACATGTTGTGTCCCAAATACATAAGACCAGATACTTCGAGCAGACCGTTTGTACATCAGAATGTTTTATTAAGTCAAATATTTAGCATCTTATTGTACAGACCCTTCTGTTGTACATGCATTTGCATGTTCTATGTGAATGAAGCGGATGTGATTTAACCAGTGAACCATCTGATATTTTTAG
Seq C2 exon
AGTCAGCGTCTGAGGCACAGCAACCACTCCACAGAGAACTCTCCAGTTGAAAGACGAAGTCTAATGACCTCTGATGAAAATTATCACAATGAAAGGGCTCGGAAGAGCAGGAACCGCTTGTCTTCCAGTTCCCAGCATAGCCGAGATCATTACCCTCTGGTGGAAGAAGATTATCCTGACTCATACCAGGACACTTACAAACCTCATAGGAACCGAGGATCTCCTGGGGGATATAGCCATGATTCTCGACATAGGCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297:ENSBTAT00000002971:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(13.8=40.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]