GgaINT0045685 @ galGal3
Intron Retention
Gene
ENSGALG00000012511 | B6IDG6_CHICK
Description
NA
Coordinates
chr7:36953796-36958415:-
Coord C1 exon
chr7:36958230-36958415
Coord A exon
chr7:36954447-36958229
Coord C2 exon
chr7:36953796-36954446
Length
3783 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
GGATTCTTTGATACTCGTAGAGC
3' ss Score
3.2
Exon sequences
Seq C1 exon
GAGATGTTTGATGTAATTTTGGATGAAAACCAGCTCGAAGATGCTTGCGAACACTTGGCGGAGTACCTGGAGGCGTACTGGCGTGCTACGCACACCACCAGTAGCACACCCATGACTCCTCTTCTCGGGAGAAACTTAGGATCCACTGCACTGTCCCCATACCCTGCTGCGATCTCTGGACTGCAG
Seq A exon
GTATGAAAACACATTTCAGCCCCAAACAGCAGCGCAGGTCAGGTATCTTGTTATGTTATTGTTAATTCTGGGGGGGAATGGTGTACGTGTTGTGTACAGCAGAAGTCATATGTGCTTCTGTGTCAGCTGTTTGGCCACAGCCAGCAGCAGGAATGCAAGCTGGAGGCCCGTAGTCAGCACAGACACAGCTGAAGCACTGGGACAGCTCCGGCTTAAGTGGGAAATGCAACAGCGCACGGCGCTGTCAAGTGCTATCGTGGCCATATTAAAAAATGGCATTGTTTTGATGTGGAAGAGATGCCGTTGGCAGCGGGATGCTCTCAGCTTGAGAACTCGCTGTGGCACAGCAATGGAGCTCCTGGCTGCCGTAGCTGGGAGGAACAGTTTCTCTGATGTCCCATTTTCTTACTCATAACTCCACAAAGCATTCGCATTTGGGTGGCCAACATCCATGCTTGTCTCGTGTCAGCAGAACGCCTTCACCTTTTGAGTTCTCTGAGTGTGAAGAATTTCCATTTTTTTAACCCATTGAAAAAAAATTCTGACCGTTTTTCTTCGCAGGGGTAGCTCAAAAACGGCTGAACTTTGGCACTTCAAACGTGGCATGTAAATAGTCCTTAACGAGAAGTACGTGCTTTACTAAGTTTGAAAACAGAACGTGTTGTTGAAGTGATAGTTGTGAATGCTTGAGAAGACCAGGACTGTAGCGAAGTCTGAGCGTTTCAGAAGGTGCTCTGTGTGTGTGTGACCTCACAGGGACGTGCACCTTCTAATGTATGTCCAAAGTAGATCGAGCAAACGGGATTTGATGAATTATTCACCTGACAAATTTAACCTCTGTTCTGCTTGTAGAATGTCTGGAAGCAGGTAACACTCCTGAAGGAGATGACTCACTGTTGAGTGTTGCCATTGAAAATGAAGCTATTTTTTCTGTGGGTGAATGGCACTTCGTGAAGGTGCATGGTGTTCGGTACTCACCTTTCTAATGATGTGCTTGATTTTATTAGGCTCAGTAAGCCACTGTTTCCTGACTGGCTGAATGCACAAGCACTGTTCTGTTACTAATAAAGCACACGTGTAAAATGTTGTTTCCATTTTCACTTGCCTTAAGATTTCAGTTTTCCATCCCGTCATGACAATAAAATACCATCTGTAGAACTGTCACCTCTTCAGTTTCATTTTGAAAACTGGGTGTATCCACAGAATTTTTTTCAGGCATTTATTTCTCTCTGATCAATGGACACCAGCAGTGACTGTGAAATGTTGCTCCATTTACTTAGGGAAAACTCACACTGAAGATGAAAATCACCCCTGTGCAGTGGGCTGGCTGAAGGTATGCATCACCTAATCCCCACTTCACCCTCATTGTGAAGGCTTAGCTGGGACCTGAATGGTGCTAGTTCTCTGCAGAGGGGTAAATTTCTCCCTGAGTGAATGGTGCCCAATTGAGGACTGCAGGACGTGGCTCTCAGTGCTACTCCAGCACTCAGGCCCATTTCAAGAATCTGGGGGTTTTTACACGGTTGTCTTGAAGACTTCCACCACTGGAAGTGCTTACCCACCGAGAAGGTGTGTGCTAATTCCAGCCTTTGGAAGCATTTGCTTCAGCTGTAAATGTTGTGATGTCATGGTGGTGATTAAAACCCTCACTCAAATCCTCGAACCAAACTAGCTTAGGTGCTGATGGTAATTTAAGAATTTATACTTCATATGGCCTGGTGACTCCTCCTCTCTTGATACCTCAGGAAAGCAAATACCAGAAGCCCCAAATACCAAAAGCCCCCAAGCTTTTTACAGCAGTCATACCTGAAACTGATGCAGATTTGCTGGGGCAGTCTGTTCGTGTTTTACCCAATCAGGATTTGGGAATATCTCTTTTTCACTCAACTGTCACTTGGAGTATAACTTACTGTGATTGAAGCTTCTAATTTAATTTGAACCTTTGGGCTTCATGAAGGTCATTAGGGTAAAGTTGGCATATGTACAGCAGAGTCATAGTAAAAAGGAGGCTGAGCCCAGCAGCTCCAGGTGTGTCCCATTACAGGTGTGTGGTGCACCTTCCAGAGCCTGTGGCCACTCGGTCCTTGGCTGTGAGCTGCTCAGCAGGGAGTGATGGGGGTGCTCACATGTATTTGCAGGCCTCAGCAGGATGAGTAAATTGTCACTGCCAGCTGGGGCCAGTGGTTAGCCTTTGTGGTTTCTATGTACCTATGTAGTTCATCCTAATTCTGGTGAATAGACTTGCATCCTGCAGTTCAGGTCTTGGGGATAAGTGCTGCTTGGGCTCCAGAGGCATTTAAAGTCAACTACTGAAGGCAGTGTCATGCAGACAGTGCTACCAGATCAAATGTAATTTGGGGTATAGCACCAGCACGTAGCCACACCAGGTTTATGCCGTGGTTACACATCTCAGGAGGGAAATAGTGGGGTCAGAATGACTATGCAATCGTAATAAAGACCGAAAGGTTTTAAGAAAAGAGCAGTTTGCATCCAGAGAGGAAATTGCTGCAGGGAATGAGGAGAACATGAGCATAGGAAGTTAAAGTTGCAGTTCACTAGTGAAGAAAATATGTGGACTTCGTCATACAGACACTACTAAGGCATGATGCTGCAAGGAAAACTTGGGGAAGGCATTATAGAAGTTGCTGCCCTGTAACACAGCACAAATCTGTAGATGAGCAGCTTTTCTGTGTCAGCTCACTATGTGGAGTCTCTCAGTGGATAACCTTGGTAGCATCGATCCACATCGGGAGACGAGACATCCTATCTGCTGTGCTGTAATGTACACCTGTCTGCAAGGTTACTTCCCCATGCAGACAAGCCTTTGGTTATAAATTATGCAGTTTAACAGTTGCCACAGAGAAGCTGTAGTAATGGGAGGAAGGTTTTAGAGCTTGGAGAGCCTTGCCCAAGATTTTAGAAGGGAGAGGAGCGGGCAATGCTGTGTGTGCCTGTGAAACTGAGGCCACAGGGGTGCAGCCATCACAGCAGCGTTCTGCTGGCACTGCCAGGATCAGAACAGTGACTCTGGGTCTGTCATCTCGGGAAAGGAAAGCACAGACCACGTTTGTTCAGAGAGCTGTACGGATGAGAGGCTTAATGTGATGGCAGTAAACCGGATTGTTGTCTGCATAGACCCCTTCATTGTGCTAGTTCACGGGCAAAATACATGGACCAGTTTTTTTTATGTCACAAATGTAATAAATCATTTTGGGAATGTGAGGATAGAAAAAGCTCGTTAACTTACTTAAAATACTGTATTTTAGCTGGAAGAATTTGTTAACATTTTAACTATCCCTTTGCTGCCCAGTTAGCTGCTGTCACTTGTTGGGTCGTGTGAAGGTTTTTACAGAGAGCTCAGAGAGCTGAACCTTCAAAAACAACAGGGAAAAAAACCCTCTTCAGCTGCTTTCTGAAAATCCATAAACCAGTGACAAACTATTTCTAAGCAGAATAGAAGCATGAATGTTAGTATGTTCATGATCAGAGAAAGGTGATAAATGCTGAATACATCAGCTCACTTTTCATGCTAAGCGACCTGTAATATTTAAGGTGGTGAATGCCGTAAGATACACGCTGTAATACCGTGTTTGGTCTGCTTTCAGCTCTAGGAACCAAACTATTCTTGCAACCCATTCCTGTAAGCGTACAGGTTTTAACATAGAATGAATTTCACAAAAGTGGATGGATTTTGAAAGACCTCAGAATAAAGTTTCAAAACTAGCTTAACAATGCCAACTACTCTTTATCTGTGCTAACGCTTGGATTCTTTGATACTCGTAG
Seq C2 exon
AGCCAGCGTATGAGGCACAGCAGCCATTCTACAGAGAACTCTCCAATTGAGCGACGAAGTCTCATGACCTCAGATGAAAATTACCACAACGAAAGGGCTCGGAAGAGCAGGAACCGCTTGTCTTCCAGTTCCCAACACAGCCGAGATCACTATCCTCTAGTGGAAGAAGAGTACTCTGACTCATACCAGGACACTTACAAGCCCCATAGGAACCGAGGATCCCCTGGAGGATATAGCCATGATTCACGACACAGGCTTTGAGTTCAAGAACCTGGGGAAAAATAGTATTCATCAGTCGATAACTTGCCATGACGTAGCTAGGAAAAACAATTCACCTTAATTTGGCAGATGTAACGCGGTTATACTGAGGTTACACTCTGCTGTCATTTGATGTTAAGTAGGGGACAAAAGAGTTATCATGCCCTTACGTTTATGCCCTGTCATACAGATTGTATTTTGTTGAGTTTTTTTTTAGTACAGCATATACATTTATAGCCATACCTTTTCTCGTCATTAGATATTAGGCACATCAGTTTGTAACTTAGGGTAATTAGCGAGGCACTTATAAAGTAATTTCCTGTGCTGGAAATTCCAAATGACCAGTTCCAGTTGGAACCAATTTATAAACCAATTCCTGTTGGAATTTGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511:ENSGALT00000037762:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(13.8=40.3)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]