RnoINT0028257 @ rn6
Intron Retention
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:37955069-37959822:-
Coord C1 exon
chr3:37959637-37959822
Coord A exon
chr3:37957397-37959636
Coord C2 exon
chr3:37955069-37957396
Length
2240 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
GAACTGTCTGATATTTTTAGAGT
3' ss Score
6.17
Exon sequences
Seq C1 exon
GAAATGTTTGATGTTATATTAGATGAGAATCAACTTGAGGATGCCTGTGAACATCTGGGAGAGTACCTGGAGGCATATTGGCGTGCCACCCACACAAGCAGTAGCACCCCTATGACCCCATTGCTGGGGAGGAACGTGGGCTCCACAGCTCTCTCACCGTATCCCACAGCAATCTCTGGACTACAG
Seq A exon
GTACTACATTTCCTTTCTTTGTTGGCTTATAACTTTTGCAACCTTATTTTCAGGGTCCAATAGAGAATTAGTTAAGATGAAGACTCCAGTTGTTATTAATCTGAAGAAGCAAGAGAGGAGGGCACTGCATTTCTTTTTAAAAACACAGGGAGTTAGAGAGATGGCTCAATATTAAAGAACACTTTTTATGCTGGCTGAAGGACCTGGTATAGTTCCCAGCAACCACATGGTGGCTCACAACCATGTGTAACTTCAATCCGAGGAGATCTGACCTTCATGGGTGCCAGGCACACATGTGGTGTGCAGACATATAGGCAGGAAAAATATTTCTACTTATAAAATAAATAAACTTAAATTTTGTTATAATTAAGAAATCTAAACCTTACCCTGATCCTGACCTGTCATTGAGAAAGTCTGCTCTCCCCATAAGTTTCTTGTTCTGAAGAATTTTACTGTGAAGGGATAATGAATCTCACCTAGATTTTTAAGGACTCTGAAATCTCTGGTAGACTTAATCGTCAGCTATTTTGACAGTAATAATAATGCACTTACTCTCAACTGCATGGTACCATGGACAGCACTTCAGCGCAGCTCAGCTTCCAGGCTGCCTTAGCTGTTCCTGTTCCACAGGTGTTGAACCTGCCCGCCATCTTGTACAAACAGAATGAGTGAGCAGATTTGGGAATGACATCAGGTTCCTGTGTTTCTGGGCAGTATCTAGGGGCCTTCCTTGGTCAGCGTAGGGAGTTTGGAGATAAGCGCAAAGGACGTCAGAGCTCATCTCTCCTGCTGCTCTGCTGTTTCAGTCAGAACTAGAAGTTGGATGCCAGAGGCCTGGTGATACAAATTGAGTCCTGCCTCCCTGCAGTAATAATTATTCACCATTTATCAAGCAGCTGGAATGGATCCAAGCTCCGAGCTGAGGCATATACAGTCAAATGAACCTCTTGGCAACATGACTGGTTTTGTTTTAATGGGTTATAATGATAGCCATAATTGAAGATTTCGTAGAGTTAACTCTAAGCTAAATGGCACTCTCTGAAATTGTTATTATAACTACATTACTCCACTGCAGACAGCACCTTGGTAAGCAGAGAACCTGCCAAATAAATGAATTTCTCCTGACACTAGAAACGAACATAGGAAATGGACGATGGTAAAGGTTAGCACGTCTGTAGGCACCAGCACCATTTCTTGCCTTGTTTCCTTCGGGTACAGTGGTCTAAGAGTGACATTCCTATTGGCTATGGCTAACTCCGGATGGAAATAAAGGGAATGAGTGAGTGACCCAGTAAACTTCGTAGTGCTGGAGGGTCTAATGGTGGGTATTGTTTATAAAACATAACCCTATGACTTCCCACATACAGTAGCTCTCCCTAAGGAGTTCACTTGATGCCTTTATCCTGTGGCCTACTTCTCCCAGTAACCAAAGGTGTCTGACGGCATGATCTGTGACCCACTAATGAGTTTCCTCCTGTGGGAAGCTGAAGAGGTACCTGGGCCTTGGTTGCATCATGTTCCTGCTCTGTAATCGATGTGACCTATCTAATCTGGTAAACAGAAACAGACAGGCACTCTTTAAGTGAGGAAAAAAAAGTTAGATAATATATTTTGGGTCATCAAGTAACTGCCTTAAGATGTTAATTTCAATTTATAATCTTAAGGAATGTGGCTTATATCTGAAGATTGAGCTTCATATCTGAGTCAGACACAGAAACAAATCCATTATTTAATGGATAGTGCAAATAGTAATTTCATTCATGTTTTGAAAGCTATAAGGAATATTGATCTAGGGCAAGATGAAGTAAACATATAGTGAGCCCTTTTGGAGGAGAAATACTTTTATGAATTCATGAAAAGAATCAAATAATAGATCTTATTCTAAATTTTATCTCCAAATGATAAAATAATCCTCATTTTTTCCGAATGGAGAGAATTATTAAACCTATCTAAATAGATTTAAGTTCTATTTAAGAGTTCATTTTCAGTCCTTGTGTTTCAATAGGAAGCACAGTCATTCAATATCATAGGCTTACACTCACAAACTATCAGTAACAAAGCATCTATGTATGTTGCTTCCCAAAGAAAAGGGCCAGGTATTCTAAGCAGAACATTTGTGAATCAAAATGCTTTATTAGGTCAGACAGCAGCTCGCTTTATAGCCCCTGCTATTGCACATGCATTACCATGTTTACTGAATGAAGCTGACCTCTAACCTTTGAACTGTCTGATATTTTTAG
Seq C2 exon
AGTCAGCGGATGAGGCATAGCAACCACTCTACAGAGAATTCTCCAATTGAAAGACGAAGCCTAATGACCTCTGATGAAAATTACCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCTTGTCCTCCAGCTCCCAGCACAGCCGAGATCACTACCCTCTGGTGGAAGAAGATTATCCTGACTCATACCAGGACACTTACAAACCCCATAGGAACCGAGGCTCACCTGGGGGATGCAGCCATGACTCCCGACATAGGCTTTGAGGCTGCCCAAACAAACAAACAAACAAACAAACATCATCTGTTGACAATTTGCCATAGTACTGCTAAGATAAACCAGTCATCTTAATTTGGCAAGCATGGCACAGTATCTGCTGTGCGGGTGGTCTGCTGTCGTTTGATGTAAGGGGCAAGAATTAAATAGAAGTACATTATGCCCTTGAGTCTAGGAGGGTATTAGATACCCGGTCATATAGGTATTTTTAAGTGCTACATTTACATGATAACAGTACCTTTTGTTTTCTTCATAGATTTTAGACACATCAATTTGTAATTTAGGGTACTGATCAAGGCACATATAAAATAATTTCCCGTGTAGGAAATTCCAAATGACCAGTTCCAGTTGGAACCAATTTATAAACCAATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACCTGAGCATGTTGAAATCAATTGAAAAAATCAGAGAAGAAAAAAATACCCAATAAGGAAATCAAAATACTAATAGAAACCAAACCCAGCTATGGTATTTGTTTGCTGGAAGCTAAATTTACACTTCAAGTTGGAATGTAGAAACATTTTAATAATGTTGCCGGAATGGCTTTTCAAACTTACCAAATATATTGATAGTGCCAAAAAAAAATCTCAGAAATCTTAATGCAGAAATTATATAATCGCCTCAGATTTTAATATTTTTATTTTTCCTGATATAGCTGTTGTATTCAAAGTGTTTTGCCTTCTGTTCAGTCAGTACTGTTAGCCAGTTTGAAGTTGACAAAATCCAGGGGATATTTGAGAAGTGGTAAAGAGAAGCCCTAGCATGGACAGTTCCAGAGAGTGGAGAATGAGGTGTTGTTCCTTCTGCAGTCAGTCTGCACACAGCTGCACACATCTGGAGACCTGGTGTCAGGTAGCAGAGATGTGGCGGGGCCTCTCTGGCTACAACGGTAATTGGCTTCAGATGGGAAGTCGTCCATCGTACAGCACACCGACACGGGCTTAGGAGCTGTGCCAGCATGGCTGAGTGTCTTTCCCTCACTTCAGCCAGTCTCCATCTTTGAATATAATGAATGTTTTGGCCCTGCATCACACTTCTTTTATGTTTCATGGGCATAATCAAATTAGGTACTGAAAGTTATGTTTTCACAAAATAATTAGGAAAACTTAAAACACTGAATTAAAATCTTGCAGAGAAAGAAAAAAAAACCCTCATAGAATCAGAATATATTTATTCACTAAAAGCAAGACAGTTTCAATACACGGCATTAGAGAGAGTTGAGAGACTGCTCGGTTCCATTGATAGTGAACAGCCTTTAGACTTCTATGAGTGTATTTATGGAATTGATGACCTATGTCCTATGTTATTAAAGACAGCTTTAATCCAAGAAATTAGTGAAATTGACCCTTTGAAACAAATGTCTTTCTGAAAGGGCTTGTTTCTGAAATGACGCAATACATGTGTTTTCTAAAGACCCAATTGGAGCTAGACGTAAAGTCTCTTTCTACTAATGCTTTGAAGTCAATTTCCGAAACAAGTATAATTAATAGTATGTTAATTTCTCCAAAAAAAAGACATGGGTCCTCAAAACTGTGTACCAGTTCATTAATTTTCCTGATCAAGAGTCTAAGTTTCATATTCTTAATCAGTTATCCTATCTCGGATCCCATCAACCCATTGTCTTGACTGTATGTGCAACCCATTATGAACCTGCTTATCTGATAATGAGGCTGCCTGAAATTTTGTGGTAATCTCAAACATTTGATACATTTAAACACGGGCTCAGTCAAATTGACAAGCTAACATCTGACACTGGCTTGTGAAGCTTTTTTGTCATCCAGCGAGGCTTACAGAATTTTCTGTTAAGACATTTAACAGAGCTGTATTCATTGGGCTCTTTAATAAGCATATAATCTTCCATTACCAAATACTTTGTTAGAAGACAGAAGAGCATTTTTCCAGCGAACAAACTATATTTATTACATGTATAGCACATATTTGCATGAGAAAGAAAAACATTAGCCAAACATTTTCCTGTATGCTTTACTGGTTTCTTGTTTGTGCGCATTAAAGCATTTAATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666:ENSRNOT00000059430:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(13.8=40.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]