GgaEX1012552 @ galGal4
Exon Skipping
Gene
ENSGALG00000012511 | CACNB4
Description
voltage-dependent L-type calcium channel subunit beta-4 isoform c [Source:RefSeq peptide;Acc:NP_989675]
Coordinates
chr7:34832055-34833573:-
Coord C1 exon
chr7:34833388-34833573
Coord A exon
chr7:34832761-34832826
Coord C2 exon
chr7:34832055-34832107
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTGACCGTTTTTCTTCGCAGGGG
3' ss Score
10.98
5' ss Seq
GAAGTACGT
5' ss Score
7.46
Exon sequences
Seq C1 exon
GAGATGTTTGATGTAATTTTGGATGAAAACCAGCTCGAAGATGCTTGCGAACACTTGGCGGAGTACCTGGAGGCGTACTGGCGTGCTACGCACACCACCAGTAGCACACCCATGACTCCTCTTCTCGGGAGAAACTTAGGATCCACTGCACTGTCCCCATACCCTGCTGCGATCTCTGGACTGCAG
Seq A exon
GGGTAGCTCAAAAACGGCTGAACTTTGGCACTTCAAACGTGGCATGTAAATAGTCCTTAACGAGAA
Seq C2 exon
GGAAAACTCACACTGAAGATGAAAATCACCCCTGTGCAGTGGGCTGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(13.8=40.3)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSGALT00000020437fB5707
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACTTGGCGGAGTACCTG
R:
CCACTGCACAGGGGTGATTTT
Band lengths:
180-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]