DreINT0040917 @ danRer10
Intron Retention
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64939350-64939802:-
Coord C1 exon
chr5:64939666-64939802
Coord A exon
chr5:64939565-64939665
Coord C2 exon
chr5:64939350-64939564
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTTTTATTTCCCAATATCAGGAG
3' ss Score
7.24
Exon sequences
Seq C1 exon
GATGAGCAAAAAGCAGAGGATGAATTGGCCAAAAAGCGAGCCGCATTTCTCCTGAAACAACAGAGGAAGGCCGAGGAGGCTCGACTCCGCAAGCAACAACTGGAGGCTGAAAGTGAGCAGAAAAGAGATGAAACCAG
Seq A exon
GTAATGGATAAAGTCTGGTCCTTTAGGAATATAAAAATGGAGGGGAAAAAAAGTAGAAGTTGAATTATCTGCTTGAATTGTCTTTTATTTCCCAATATCAG
Seq C2 exon
GAGGAAAGCTGAAGAGGAAAGAATCAGAAAAGAGGAGGAGAAGGCCAGGAGAGAGTTGATAAAGCAAGAGTACCTTAGGAAGAAACAGCTGGAGCTGTGTGAAGAGCAAGAACAGCCTCAGCCCAAACCCAAGACCAAGCCCAAAAAACAAAGGCTGAAGTCTGTGGTGAAGGAGGAACCCTCCATTGATCCTCTTCCCAAGTGCCCTGCTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122:ENSDART00000147707:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=NA C2=0.881
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACAACAGAGGAAGGCCG
R:
CCTTCACCACAGACTTCAGCC
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]