GgaINT0125779 @ galGal4
Intron Retention
Gene
ENSGALG00000001692 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr17:8203721-8204152:+
Coord C1 exon
chr17:8203721-8203857
Coord A exon
chr17:8203858-8203943
Coord C2 exon
chr17:8203944-8204152
Length
86 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATG
5' ss Score
6.42
3' ss Seq
TGTTGTGGTTTGCTTTTCAGTCG
3' ss Score
8.36
Exon sequences
Seq C1 exon
GACGAACAGAAAGCAGAAGATGAGTTGGCGAAAAAACGTGCGGCGTTCCTTCTGAAGCAGCAGCGCAAAGCTGAGGAGGCTCGGCTTCGGAAGCAGCAGCTGGAGGCTGAAGTTGAGCAAAAAAGAGATGAAGCTCG
Seq A exon
GTAATGGCATGTGGAGAAGGATGGCTCCTTTTATCTTTAAAATGAGGAAAATCGTTATATTCTGAATGTTGTGGTTTGCTTTTCAG
Seq C2 exon
TCGCAAAGCTGAGGAGGACAGAATACGCAAGGAAGAGGAGAAGGCTCGTAGAGAACTTATCAAGCAGGAATATCTAAGGAAAAAACAGCAGCAAATCTTGGAGGAGCAAGGGCTTGGAAAGCCCAAATCAAAGCCCAAGAAACCCAGGCCAAAGTCGGTCCATCGTGAGGAATCTTACAGTGATTCAGGGACAAAGTGTTCTTCTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692:ENSGALT00000002593:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.739 A=NA C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGCTGAAGTTGAGCAA
R:
TCTTGGGCTTTGATTTGGGCT
Band lengths:
178-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]