DreINT0041144 @ danRer10
Intron Retention
Gene
ENSDARG00000091699 | capn2a
Description
calpain 2, (m/II) large subunit a [Source:ZFIN;Acc:ZDB-GENE-050320-69]
Coordinates
chr13:42611058-42612463:-
Coord C1 exon
chr13:42612452-42612463
Coord A exon
chr13:42611270-42612451
Coord C2 exon
chr13:42611058-42611269
Length
1182 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTTGTTCGCCTCTTTGCAGTTT
3' ss Score
8.89
Exon sequences
Seq C1 exon
GTGCCTTCTCAG
Seq A exon
GTGAGCACAGTGGAGTAATCTGTAAATATAATTTATGCAAGATGGTTTTTGATAATATGTTTTTTTTTATATAAATGACCAACACATAATTACTCAAAACACACAAGTTCAAGTTCATTTATTTATAAAGCACATTTAAAAACAGCCACAAGATTGACCATAAGTGCTGTACATAAGAAAGAGTAATATTTAGTGAAGATAGAAAGATAAAAATAAAACAACGAATGATGTTTAACAGAGCAAGTCATTTTTCACAGTAAATACTTTTTCTTCTGGAGATGGTCGTATTTGTTTTATTTCAGATAGAATGAGAGCAGTTTTTAATTTATTAAAAAACATTTTAGAGTCAAAATTATGAGCCCTCTTAAGCAATTTTTATTTTTGATTGTCTATAAATTTAGTTTATTTGATTACAGGGTCAATGCACATTAATAAACATTACTGTAAAATGTGCCAGAATTAGCCAAGAATGGCTAGTTTTCATCTGTAGACCCCTTACGCCCCATTCACACGGGGATTCAGCTTCAACGCTTGACGTTGAAAGTTGGGGCTGACGCGATCATCACAGCAGCGTCAGCCAATAAAATTAGTCAGCAATAGCCACTGTCTGAGTTGGTGTATTTGCATACAGTGATCTGATTGACGCTTTCATCGAAAAGATGAGCAAGTCCCAGCTTCTGCAGCGAGCAATAGCACTGAAGCAGCGCCGACGGATCCACAATGCAGTACCTGACATCACCTATTCAAAGTGAATGGGAAGCGTTGACAGCTTGTGAATGGGGCATTACAGAATGTTAAAAAGTCACACTTAAAATAAAAGTAAAACATAATAACACAGAATAAACTATAATATACACATGCATACATATATAAGCATCTATATACTGTATATACCAATATATTTACATATACTGTATACATTTGCATACATTAAACATACACATGCATACATATATACATACACATATTTATAAAAAAAACATACAAATACAAGTCAACAAAGTTTCGTTATACTTGCCTAATTAACCTAGTTAAGCCTTTAAACGTTAAGCTGAATACTAGTATCTTAAAAAATATATAGTAAAATTTTATGTATCTTACGTATATATCAATGCTCTGTTGACTTGTAGTGTTGAAAATGTACAAATATAGTATTTCTGGTTCTTGTTCGCCTCTTTGCAG
Seq C2 exon
TTTCATGGGCAAAAGGAGGTTCATCTGGATAAGAACTATTTCCTGACTCACGCTCAGAAAGCTCGATCTGAAACCTTTATCAACCTCAGAGAGGTCAGCACCCGCTTCAAACTTCCTCCTGGAGAATATCTCATCGTCCCTTCTACATTCGATCCGCACAAGAACGGGGATTTTTGTGTGCGTGTGTTCTCCGAGAAACAGTCTGAGATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091699:ENSDART00000140019:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(2.6=100)
A:
NA
C2:
PF0106717=Calpain_III=FE(45.5=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]