DreINT0045190 @ danRer10
Intron Retention
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14540925-14542791:-
Coord C1 exon
chr8:14542625-14542791
Coord A exon
chr8:14541128-14542624
Coord C2 exon
chr8:14540925-14541127
Length
1497 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TCTTATATTCCTCCAATCAGCAG
3' ss Score
5.75
Exon sequences
Seq C1 exon
TGGGGGTGGCAGTAGTAGTACCCAATTGAGTCCACCTCATTCTGGTCAAACGGAAAGGAGGACACCTGGTAAAGACAGAAGCAGTAGTTCAGTGGAGGACCAGGCTCACACTGCTGCCGATGACTCTCTTTGCTCAAACAGTGTGCTTGGCCCTCTTGAAGAGAAAG
Seq A exon
GTAAAGCTTGTATTGAGTGATATTCATGTGTATACAGTGCTGCAGACTGCTTTATTTCCTTTTGCTGCACGATATTGGGAGAATGTTGAATATTGCAATATTGATAAAGAAATTAGTTAAAAATCATATACGTGTAATGATCAAACGAAAATATTTGAAGCATATAAAAATATTAAACGTACTCTAATTCTCTTTAATCTAATTCAGGCTAAAAAAACTTTCAAGGAAGGTGCAAAGACTTTGACTTTAAAATACAATGTATTGTCAAAAACCTCAGTAGACATTCTGATTTCTGGTTTGGTTTTATCATAGACATATAAACACTAAATGCATTACTCTCAAACATTATTTTTATTCCCATAAGCAACACAGCATCTTAAACTAGTCCGTATTTTAAGCAAAACGCTTCCTTGCCTGTTTTTATAAATAAAGTATACAGTCCTTAAATAATTGGTATGAAGTGGAAATACTAACATCTTGTCCACATAATTTTTCGATATCTTTAGTTTAGCTCTACTACCAGTGCAAATAAACGATACAGTTCCACTCAACTGATAAGCCAGGATATTTTCTTGCAATTGAGATAAATCGAGCATCAAAACAGAATGAAATAACAATACTTGTTTGAACTATACACAGCACACATATGAACCAGAATGAAACGTCTTTTTTTGTAAACCCCTGCCTTTTTCCATGACATTGACTAGAAATACCTCTAAACGGTAACAGTCAGGTTAGAAAGCTTTTCATTTCGTTTTTTTTTTTTTTTTTTTTTTTTACAGAAACAGGAACCATTGGCAGAAATGTGGGATGTTGATATGCAATAATGTCTACATTTTTTTGTAATTAAATTATATCAGTTGTGCATTTGTACTAAATAAATGTTTAAATTTTTTATAACATCATAGAAAACGTAAAATCATTTTATCATAATAATCAAAATGGTTATTATGATCTACAAATGATCAACTGCTTTCATTTGATCAAAACTCTTATCAGATAATAATGTGACATTATTAATACTATGAACTCTTATTAACATTATTCAAATATTGAAATCTGTATTTTAAATGCATTCATGTGATGCCAAAGCATATTTTCAGCGGCAGTTATCAGTCTTTATTATCACAATCTAAATAGAAATCATTGTGATATGTTAATTTGGTAATAAATAAGCATGTCTTGTTGTTCATGGTGAAAATTTTACTGTGCTATACTTGTGGTTATTATGATCTACAAGTGGGATGAGGCTATAATAACCTTCAGTTCGCTTTGTTTTTGTTCTTGCTATTTTCCTGTAAAATGTGCTTCTTTAAGAGATAAAAATGTTATTATATTTTTACATGTGCAGCGCTACCAAATCAAGTGTTGGTGAAACCATCTGTAGAACTTGTATCTAACGGTGCCACTGCTGTCAAATGTCAGCCTTCACCCCTGACATAGCCAGTTCTAAGAAATGAGTCGTTTTAATCACTTCTCTTATATTCCTCCAATCAG
Seq C2 exon
CAGACTGTGCCTCCATAGCAACAGAGTACTCTGTGAAGTTTGACGATTCGATGACCGAGGATGACATCGAAGAAAGATCGTTCCGCTCTCTTTTACCATCTGAGGCTCACCGTCGCGAATCACTGGACAAGAAGCCTGAAGCTCATCTCGAATCTGATGAAGACCACAACCATGACCAATCCAGCCCTAGAGCCAGTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000:ENSDART00000146175:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGGCAGTAGTAGTACCC
R:
TAGGGCTGGATTGGTCATGGT
Band lengths:
354-1851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]