GgaINT0038292 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6331476-6332355:-
Coord C1 exon
chr8:6332183-6332355
Coord A exon
chr8:6331673-6332182
Coord C2 exon
chr8:6331476-6331672
Length
510 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
3' ss Seq
CATTAACCCGCTTCCCTCAGATT
3' ss Score
6.6
Exon sequences
Seq C1 exon
TAACAGTAGTACCAGCAGTCGCCAAGAGAGTCCTTCTGTTCCGTCTTCTAAAGAGAATGAGAAAAAACTTCCCCGTCGTGAAAAGATAACTAGCAGCATTGAAGAGCAGGCTCATACTGGTGTGGACGATTCCTTGCCGAGTGATAGTATTTTATCACTGCCAGATGAAAAAG
Seq A exon
GTTAGCTGTATTTGTATGTAATGAACCTGAAAGTGGTAAGGGGAGAGGCAGGTGCTGCTTCAAAGCTAGTTTGTGAAACAAATGAGAGAATGTGTGTGAAGTTTGAGTCCCAGATGAATTGGTAGTCTCCTAAGCAGAGGGTAGCATAGCGAGATTGGAATATTTTGAGATTCTGCACGTTGCAGTGATGGAGTCTTACCTACTTTTTGCTGTGGTAACTGTAGCTAGCCAGACGTTTACTTGCTGAATGTGTAGACTGAACACCACATGTTTTGGTAGACTTAAAATGTATTTATACCTGTATATAAAATTCTGTTAGGTCTTTTTTAAGCTAGATGACAATACTGCAATATGTCCTCTAACTCAAGGCCACTTTTCTGAAAGCAAAGATCTTGTTTTGCATTGGAGGTGTCCTCTCCCTGTCTTTCCTGTCCTTGTGGCTTTACTGGGTTGAGACAGGGTAAAATGACCTGCATGGTACATACTTGAGCATTAACCCGCTTCCCTCAG
Seq C2 exon
ATTCTGCTTCTGTTGCAACTGAGTATTCCCTGAAATTTGATGAGTCCATGACAGAGGATGAGATTGAAGAGAAGTCCTTTCGGTCTTTGCTACCCTCTGAAAGTCATCGTAGAATTAACTTGGAGAAGAAGCGCGGTACTCGTGATGATTCTGATGAGGAAGTCTCCCCAGAAAAAACCGCTCTGTCATCTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTACCAGCAGTCGCCAAGA
R:
TTTTTCTGGGGAGACTTCCTC
Band lengths:
343-853
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]