DreINT0045413 @ danRer10
Intron Retention
Gene
ENSDARG00000079049 | cercam
Description
cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
Coordinates
chr10:10406317-10408679:+
Coord C1 exon
chr10:10406317-10406449
Coord A exon
chr10:10406450-10408551
Coord C2 exon
chr10:10408552-10408679
Length
2102 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TTGCCATTTATTGCTCACAGATG
3' ss Score
8.13
Exon sequences
Seq C1 exon
AGCTCTGAACAGCAGCGATATTAAGATTCTAGGTGTGGATCTTTTACCTGGTTACTACGATCCTTTCTCTGGACGCACACTGACCAAAGGAGAGGTGGGCTGCTTCCTGAGCCACTACTATATCTGGAAAGAG
Seq A exon
GTCAGTGGCGATCAAAATATTGAAATATTTTTAAAATTTATTTAAATAACACTTGGGCGATGTGGTGGTTCAGTAGGTAGTGCTGTTGCCTCACAGCAAGAAGGTCGCTGGTTTGAGCCTCAGCTGGGTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTTCGTTCGCATGGGTTTCCTCTAAGTGCTCTGGTTTCCCCTACAGTCCAAAGACATGTGATACAGATGAATTGGGTAGGCTAAATTGTCCGTAGTATATGAGTGTGAATGAGTATGGATGTTTCCCAGAGATGGGTTGCAGCTGTAAGGACATCTGATGCGTAAAACATATGCTGGATAAGTTGGCGGTTCATTCCGCCGTGGCGACCCCAGATTAATAAAGAGACTAAGCCGAAAAGAAATTAATGAATTATTAAAGTAAAAAAAAAAGTAATGTATTTGATAGGGGTGTAACGATACACTCAGCTCACGGTACGATGTGTATCATGATATAATGTTCACGATTCGATATGTATCACGATGTTTGGAATAAAAATGGAAAATTAAACTGAAATGCAAATTTTACCAAGTAAACAATTTTTTATGTATTTCATTTGTTTCAACTTGTTAAACTGAACCTTCTTTAAGAAAATAAATTAAACAGGCCTGTCTCTGGAAAATAAAACAATTTAAAAACTTCTTAAAAAATATTATTGAAATGACAGAGAAAAAATTAAGGAACGATTTAAGTAAAGGTGCAAAAAAATTAAGCTGTATCATGTTGACGTGCATTTTTGTGTACCTCTGTACTCAAAAGGGTTAATGCTCGTCGTAATCATAACTCTTAAATGCGATATTATTGTTTAAATAATGTGTAGGTTTTCGGTTTCATTTCCACTGCTAAGTCCTGTTCATACTTCCCACGCGGCTCCTGAACGATCACTCTGTTCCACAAACTGAATGTTTTTTACTACTTTATTAGTCACAACCTGCAGGTTCTGTTCACTGAAGCAGACGCGCTCGTATGGCAAGCCGTTTTAGCATTTAAACCTTTGTTCTGACTATCCATAAATATATTTAATTCATATATAATTAAATTCATTTAGAGATATCTCTAATTACAATTGTGACTAGTCAAAACTCATTAAAAGATATCTGCAAATATTTTTCAATTAATGTCAATGGAGGAATTTCACTAGTCATAATATATTTGCAGATATCTCCAATCTGATTTCGTACTAGTACAATTGTAATTGCAGATATCTCTAATTGTCATTCTGACTAGTCGAATTATAATTATGACTAGTCAAAATATAATTAGAGATATCTCTAAATATATTTATGGATAGTAAGAACAAAGGTTTAAATGCTAAAACGGCTTGCCATACGCGCGCGCCTATCAGTCCGCTCTCTGTAGTAACAGCTCACGGTCAGCTCACGTCATGTGTGATTTTGCGGCCGCCAATACATCATTATATGAAGACAGAATTATATTTTAGGGTGAATTGTACCTTCTAAATACAATCTGTGACACTTTTAACAGCATTAGAAGGTATCCATGTCACTGTGCAAAGTATGTAAATCATTTTGAAGACTTTATAATTTAGGATGTTTGACCCAGTATGCGTGTCAAAAAGCGGACGAGTCTAAAACAATGACTGTACAACCGAAATGTTGCCAGACGTCTGATTTTGAGAGGATGGGCCATCCTCTATTTCACCTCCATTCATCTTGGTCTGCTAACATTACTGCTGCAATCTGAACTCACGTGCGACAGCAGGTGGAACGTAGCTTACGTGCAAACAGCTCAACTAATAAGAGAAAACGGACGTCATATCGTAATGAAATCGTCATAACGCCACGGTGCATATTCTGACATTTTTGCATCGCAATAAATCGTACAACGATAAATCGTTACACCCCTAGTATTTGATAAATAAAAAGTTTAAAAGAGCAGAATTAAATCATTAGTAAAATCTTTACTTTTGTTGTTTTATTTAATGCATATTAGCTAAATAATTTTTTACTGACCCAAACCTGTAAATGGTAATGTATATTAAAATCATGTCCGTATGTTTTTAGTTTGTCACTAATGATTTGCCATTTATTGCTCACAG
Seq C2 exon
ATGGTAGACATGCAGCTTGACAAGGCGCTGATCTTTGAGGACGATGTACGTTTTCAAGCCAATTTTAAACGGCGCATGATGCGGCTGATGGAGGAGGTGGAGCAGGTGGAGCTGGACTGGGACATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079049:ENSDART00000109432:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(23.8=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(22.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]