GgaINT0123812 @ galGal4
Intron Retention
Gene
ENSGALG00000004986 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr17:4935200-4935642:-
Coord C1 exon
chr17:4935510-4935642
Coord A exon
chr17:4935328-4935509
Coord C2 exon
chr17:4935200-4935327
Length
182 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
GCTCTGTGCCCTCCCCACAGATC
3' ss Score
12.55
Exon sequences
Seq C1 exon
CACCCTCAACAGCAGCGACATCAAGGTGCTGGGGGTGGACCTGCTGCCGGGGTACTATGACCCCTTCTCTGGCCGCACACTCACCAAGGGGGAGGTCGGATGCTTCCTGAGCCACTACAACATATGGAAGGAG
Seq A exon
GTATGGGGCTGAGGGGCACCCTCAGCACAGGGTAGGGACCCTCCGTACAGCATCGGTTCTCCTGGATAACCTGGGGAAAGGGTCTCTCCTTCAGGGTGAGTGGCCCCAGCATTGCACAGTATAGCCCAGTATGGCCCAGTGCGGTGCCGGTGTGGGTCAGCAGCTCTGTGCCCTCCCCACAG
Seq C2 exon
ATCGTGTCCCAGGGGCTGGAGCGGGTGCTGGTCTTTGAGGACGATGTACGCTTCGAGGTGTCCTTCCCAGCACGGCTGCAGCGGCTGATGGAGGAACTGGAGGAGGCACGGCACGACTGGGACCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004986:ENSGALT00000007990:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(23.8=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(22.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAGCAGCGACATCAAGG
R:
ATGAGGTCCCAGTCGTGCC
Band lengths:
256-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]