DreINT0045446 @ danRer10
Intron Retention
Gene
ENSDARG00000013704 | cers2a
Description
ceramide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020808-2]
Coordinates
chr19:8870470-8873293:-
Coord C1 exon
chr19:8873175-8873293
Coord A exon
chr19:8870528-8873174
Coord C2 exon
chr19:8870470-8870527
Length
2647 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
GGATGTACATTTTCTTACAGTTG
3' ss Score
6
Exon sequences
Seq C1 exon
GCTGAAGTGGAGAGTTTAGTGAAAAAGACGGGGCACACGGAGAGAGAGATCCACAGATGGTTCCGGCGACGAAGGAACCAAGAGCGACCAAACCAGCTGAAGAAGTTCAGAGAGGCCAG
Seq A exon
GTACACGACAACGCACCTGCATCCCTTCATAAAGCTCAAATGATATCACATTTTATAAGCCTTACAAAAAAGCAAATGTCATAAAAATATCAAATGATTAACAGTGCTTCCTGATAATCTCAACACTAACGCAGAGTACACGATATTCACAGTACAACAGAACAAATAAACATTTTCCATTAGGTGGTAGGAAGCACTCAGGAAAAAACGGTATGTGGTGTTATTATAAGCAGAATAAAATTTGGCTAATGTATGAAGTAAATTCACTGTTCTACTAACTTTTGGACTGGTCCTTTTAATATCTCGTCTTTGACATTTCAACATTACCTGTCTTGTGCTTCACACGAAAAAAACACATTCAACACGTCTAATTAAAGGAATGTGAACGGTACGGTACAAGCTGAGATTTATCTAAAGCATTTGGGATATTGTTGATAATCTTTAATATTTCACTTGTTAGTGTAAGAGAATTAAAAATATTCCACTAAATGTTTGCAAAATACAGTCCATCCAGAAAGTATTTATTGTGCTTGACTTTTCCCACATTTTTTATGTTTCTGCCTTATTCCAAAATAATTCTACACACAATACCACTTAATGACAAGGTGAAAAAAGATTATTTTTAATTGTTGCAAATTTATTAAAAATAAAAAAGCTGAAAAATCTGATATTTATATATTTATGGATACTTGTTATAAATGTATATATTTATAATAAGTATTTACAGTCTTTGCTCAATACTTTATTGATGCACCTTTGGCAGCGATTACAGCCTCAAATCTTTTGGAATATGATTCCTCAAGCTTGGCACACCTGTCTTTTCACCCATTGCTCTTTGCAGTACCTCTCAAGCTCTATCAGGTTGGATGGGAAGCGACTGTGTACAGCCATTTTCAGATCTCTCCAGAGATGTTTAATAGGATTTAGGTCTGGGCTCTGGCTGGGCCACTCAAAAACATTCACAGAGTTGTTGTGAAGCCACTCCATTGATATTTTGGTGGTGTGCTTTGGGTCATTGTCCTGCTGGAAAATGAACTGTTGCCTCAGTCTGAGGTCAAGAGCACTCTGAAGCAGGTTTTCATCCAGGATGTCTCTGTACATTGCTGTATTTATGTTTCCCTCTATCCTGACTAGTCTTCCAGTTCCTGCTGCTGAATTACATCCCCACAGCATGATGCTGCCACCACCATGCTTCACCGTAGGGATGGTATTAGCCTGGTAATGAGTGGTGCCTGGTTTTCTCCAAACGTAGCACCTGGCATTCACTCTAAAGTGTTCAATTTTAGTCTCATCAGATCAGAGAAATTTGTTTCTTATGGTCTGAGAGTCCTTCAGATGCCTTTTGGCAAATTTCAGGCGGGGAGTGGCTTCCATATGGCCACTCTACCATCAGGCCTGATTGGTGGATTGCTGCACAGATGGTTGTCCTTCTGTATGGTTCTCCTCTCTCCACAGAAGAATGCTGGAGCTCAGACTGAGTGACCATCAGATTATTGATCACCTTCCTGACTAAGGCTCTTCTCCCCCGATCACTCAACCTAGTGGTCCTGGTCCTGGTGGTTCCAAACATCTTTCACTTACGGATGATGGAGGCCACTTTGCTTATTGGAACTTTCAGAGCAGCAGAAATTCTTCTGTAACTTTCCCCATTCTTGTGCCTCGAGACAATCCTGTCTCGGAGGTCTACAGACAATTCCTTTGTCCTCATGCTTGGTTTGTGCTTTGACATGCACTGTCAACCCTGGGGCAATATATAGACAGGGTTTGCCTTTTCAAATCATGTCCAATCAACTGAATTGACCACAGATGAACTCCAGTTAAGCTGCTGAAAGATCTCAATAATGATCAGTGGAGACAGAATGTACCTGAGCTCAATTTAAAGCTTCACATCAAAGGCTGTGAATACTTATGTACATGTGATTTTTCAGGTTTTTTATTTGTAAAAAAATTGCAACAATTTAAAAAAATCTTTTTTCACATTGTCAGTATGGGGTATTGTGTGTAGAATTTTGAGGAAATAAATTTTATGAATCTACTTTGGAATAAGGCTGTAACAATAAAAAAAGTGGAAAAAGTGAAGCGCTATGAATACTTTCCGGATGCACTGTATGACCATCATAAATCCAGAAATGTATCCGCCTACAACACAAGACGCAGTTTAAGCATCCTTACAGCCTAAATGAATTCGATTATGTGCTTAGACATAAACACCGCCCTCATATTTCAGAAGTGCATGACCCAGTTTACTTAAGTGCGCTGCTTTAATGCATCTTTTATTCTCTGTGCTAATGTACATTAAGCCACAAATGCTTGTCGATAGTGCTTGACTTGTATTAAGCCTGAAACATCCTTTAAATTAGCCTGTTTTCATGCTGTCAGTCAACAGTAGGTTGTAGATGCTGTACAAAAAAACTGGCGTAGGAGCTGTTGGCTTGTAATAGTAGTGTTTGTGTTGTGAGTGGAGCGTATGCACCTTGTTTTTTTGTACATTTTGTCATTGTGTGTGTGTAGTAACTTCATGATTGAATATGTCTAGACCCTTAAAAGAAATGTTTTTGGAAGCAGTAATTCTTGAAAGTTATGCATGTAATATTATTTTGTTGCCGATAGTGTCGATTTGCTGAAATGGATGTACATTTTCTTACAG
Seq C2 exon
TTGGAGATTTACCTTTTACCTTGTTGCTTTCATTGCTGGCCTTGCTGCACTTATTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013704:ENSDART00000025385:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(50.0=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]