GgaINT0145867 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C668]
Coordinates
chr28:112798-115508:-
Coord C1 exon
chr28:115390-115508
Coord A exon
chr28:112856-115389
Coord C2 exon
chr28:112798-112855
Length
2534 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
ACATCTTTCTTTCTTTGTAGCTG
3' ss Score
11.03
Exon sequences
Seq C1 exon
GGTGAGCTGATCAGTTTAGCCAAGCAATGTGACCTGCCAGTGAGAAAAGTGGAGAGGTGGTTTCGGCGCCGGAGGAACACCGACCGACCGAGCCTGTCGAAGAAGTTCTGCGAGGCCTG
Seq A exon
GTGAGCAGGAGCACAAGCTGTGAGCTGTAGGGGCCTCTCGCTGGCTCTGAGCTTGGCAGGCATCTTGCTGCCTCCAGCCTGCCTGCACTCATCCATAGAGAGCTTCCTGAGCCTTCCCTGCCCCACCTGATTCTTCTGTGGCTCTGCTTCTGCTTCCCTGTTCCCGAGTCATTCCTTGCTTCTCCCCTTTATTTCATCCCCAAGACTCCTTTCTTTTACTCCTATTTCACTTCATGCCTCATAGGATGCCTGTTTTTGACTTTTCAAGACTGACACTCTGCTTTGAAGCACAATAATATCTGAGAAATTCAATATTGTTTTTCTTCCTACTGCTTACTGCTGCTTTGCTGCTGCTTCTGTGACTCCAGAGCAGCCTACCGTTGCCTCTCTGTTTCCCTCCCATTTCCTTCACTGCAAGCTGATACCTTCTGCTGTATCTTTTCTGCAACTGTTCTCCACAGTACTCCTTTCAAAAGTCACAGACACTGGGCTAGACTGTATTGTGTTGGCAGCTGACTTTCAGCTTCCCTGAAAGCCAAAAAGTAGAACCCTTTTATAATGTCCGGAAAGAGAGCCTACACGGGAGCTTTTCCTAGGAGACACAAGCAGGTCTGGCAAAAGAGGACTATCATTGGACGCCTCACTTTTTAGTTACTTCAACTAATGCAGATTGAAGTTGTACTGGAGCAATAGCCCCAGTAGACTTGAGCTGGCTTCAAGCTTACATGTTCACTGCTGCCCTTGGAGGCTCTGGTGACCTGGCCCATGGCGGCCTGTTGCACAGCTAAAGTCAGAAGCTGTGCAGCTCTTAGAGCTCCATGACTGTCCATCCTTGTCCCCATGCCCAGACAGGCTTTCTAGGCTGGGATTGCCTCCTTGCCAGAATCTAGATGAATCATCATCAAGGCTATTTTATAGCAAAAAATCAGAGACTGTACAACTCTTCAGGAAACTGTTCTACACTGATGCCCATACGCCCATGAGCATGTCCCAGCTATTCCCCCAGTCTGTGTCTTTGTGATTCCTCCTGGGGACCCCACTTGGTCCTCATGCTTGTGCAGAGGCTATGAAAATCTCAGCCTGAGGTTGTTACAGATGTTAAGATCTGAGAGGTTATGCTCTGTAATAGTACGTGGTAGACCATCACTCAGCAATTGGTTCTACGTAAGTTCCTTTATGTTGGGGTTTGGTGGGAGAAGAAATGAACTTCCATGGTGGGAGAATACAGAATTGTGTTTAGAGGAATGCCAAGAATGTTTTGGTAAAACTTTAGAGATTAGCCTTCTTAGAAATGTTAGCTTTGGCTCAGCTTTCCACAAAGAGGGAGAACTCTCCTGGGCTTGGGTGAAATGCCAAACTGCTGAGTGCCTGCTCTGCTTCATTTGTGGAGAAAGAGGTTCTTCCAGAAGGCCACAGAGATGAAGGAAAAAATAACTACCTGCAGTGACATTTGTCTGACTAAAAGTGTGCATCTGTAGGGGAGGCATCACCTCTGGGCTGATCACAATCCATTTAATATTCAGCCTCTAGTTCAAAATTCCTACCTAAACCCCCTAATGGAGAAAACAACAAAAAGGGTGCACATTATTTATTTATAGCATTGCAGATCATTACAGTTAGAAAGATTTACTGAGCTGTGGACAAAGAGTTGGAAAACAAACATGCTTAATCTACTTCTATCAAGATGAAATCCAAGCTCTCCCTGCGCTCAGCTGCCTTACAGTAAATAGTACCAGTAAACACTAAACAGTAAATAGGTTTCTAACTCAGCCCACTGACAATAATGTGTTTCTGCCTGCCCTCTGTTGCCACTTGCCGTCTACAGAAAGAACACCCTTCCAACATGAAGTTTATGTCTTTCTTGGAGTCCTGGGTATTTCATTGACAAATGGAGTCTTTCAGAACATAAAGCTGCTTTCAATTTGTTACAGAAATATTTGGTAATTTAAGAGCTGTTGTAGGCAGTTTTACGCTTTTGCAGATTTTCTGTGTGTAGTCTATTAGCTGCTCGTTTGTTCTGCTGGGATAGAATTTCCCTCATTCCTTACGGTATGTGTAAATATGCAGCATTACACACCTCTTTCCATTGAACTTCTATTTTATACATACTTAATATGTACTTCTCTGTGGGTTTAATGTGGGTAAGTCATTAGTAGCTCTCACTAAGACTGAACGTAGCAGCAGTCATTTGCTTTACGTGATAAAGAATTTAGCATACCTAATCTTCAAAAGCCTAAGGAGGAGATTGGCACTGTTGGAGTTTTACACATGTGTCTAGTTGGGCTGGGAAGGGTTGGGATGGTTATCTGGGTGATTTCCACATTATCTGGGAAATGATAATCACCTAGATCATCATCTGAGTGATTTCAGCAGCCTTTGTGGCATCTGTTGAATATGCTAACAATATACAGAATCTGTTAGAGTCTAGACAAACCTTGAACATTTTGATGTTTTTGTTTGCTTTAATGACATAATTCTCTGAATGAGTGGGATTGATACACGGAATTGTTACTGACATCTTTCTTTCTTTGTAG
Seq C2 exon
CTGGAGGTTTACGTTTTACATCGTTTCTTTCTTCACTGGGCTGGCTGTACTGTACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307:ENSGALT00000000407:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(50.9=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]