DreINT0045453 @ danRer10
Intron Retention
Gene
ENSDARG00000058992 | cers2b
Description
ceramide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-110408-40]
Coordinates
chr16:1370506-1373218:+
Coord C1 exon
chr16:1370506-1370659
Coord A exon
chr16:1370660-1370760
Coord C2 exon
chr16:1370761-1373218
Length
101 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
TGTTTGTTTCATCTCAATAGTCA
3' ss Score
7.43
Exon sequences
Seq C1 exon
GATCATGTACTGTACGTGGGTGTATCCCGTGACGCTCTACCCTCCGTTCTTCGGATATTACTTCTTTAACGGTCTGCTGATGGTTCTGCTGTGTCTGCACATGTTCTGGGCTGCGCTGATCATACGCCTGGCCTTCCGCTTCCTCAGCAGCAAT
Seq A exon
GTATGTCCAGATCGTTTACACTGGTTAATGCTTTAACAAACATTTTTTAGCAGTGCATCTTTAAAGATTTTCTCCTGACATTGTTTGTTTCATCTCAATAG
Seq C2 exon
TCATCAGTAGAAGACGAGCGATCTGATCGAGATGAGACGGACGAGTCTGAGGAGGAAGAAGAGTTGAAAAATGGAGAGATAAAGAAGAAGAACGGAGCAGCTCAGAACGGCCACGCCACATACAACAACAACCACTCGAAAACAGAGTGACGTCCTGAGAAAAACACACTCACAGTCACTGAGATCCGTCATCTCCTGAGGCAGAGCACTGAGAGCTGAGCACAGTTCATGAGCAGAGAAGGTGCTGTGTACACTACACACACACACTTACATACAAACATGCCTACACACATATATGCATACATACATACACACATACATACATATATACATACATACTCACACACACACACACACACACACACACACACACACACACACAGACTCTCCTCTGTCTGCTGGAGAAACACGGCCTCTACTGACGTCCACTCTCAGGAGCAGATCACCTGAAATCAGCAGCAGCATCAACACACCGGTGACGCCACTACAGGGATTTACAGATGAATGAAACCACTCCAGCCCACAGAACAAACTAGCGCTGTTGCCGAAAACCAGCTCTGCATCCATTCTGAGCTTTACAAAATCAGTCGCTGTTCTCTCTTGAAACCACTCGGAGGGTGTTTTTAACAGTAGTTGGTGCTCTAGACTAGTGTTTAACAGCAGACAACGCTCTAGGCTAGTTTTAACAGCAGACGGCGCTCTAGGCTAGTTTTAAACAGCAAATGGTGCTTTAGGCTAGTTTTAACGGCAGTCACCGCTCTAGGCTAGTTTTTAACAGCAGATGTCACTCTAGGCTAACTTTTAGCAGCAGATGTTGCTCTAGGCTAGCTTTTAGCAGAGGACCGTGCTCTAAGCTAGTTTTTAACAGCAGATGTCGCTCTAGGCTAGTTTTAAACCGCAGATGACGCTCTAGGCTAGTTTTAAACTGCAGATGACGCTCTAGGCTAGTTTTAAACCGCAGATGTCGCTCTAGACTAGTTTTAAACTGCAGATGACGCTCTAGGCTAGTTTTCGAAAAAGGACGGCACTCTAGGCTGTTTTTTAACAGCAGATGTCGCGCTAGACTAGTTTTAAAAGCAGCTGTCGCTCTAGGCTGGTTTTTAACAGCAGAAGGCACTTTAGGCTAGACTAGTGTTTAAGAGCCGAAGGCGCTTTATGCCAGTAGATGTCGCTCTAGGCTAGTTTTTAACAGCGGACGGTGCTCTAGGCTAGGTTTTAAACGGCAGACAGCGCTCTAGGCTAGATTTTAAACGGCAGACGGTGCTCTAGGCTAGTTTTTAAACAGCATACATCACTCTAGGCTAGGTTTTAAACAGCAGACAGTGCTCTAGGCTAGTTTTTAAACAGCATACATCACTCTAGGCTAGGTTTTAAACAGCAGACAGTGCTCTAGGCTAGTTTTTAAACAGCATACATCACTCTAGGCTAGGTTTTAAACAGCAGATGGCACTTTATGTAGTTTTGAACAGCAGATAGTGCTCTAGGCCAGTAGATGGTGTTCTAGGCTAGTGTTTAAGAGCAGAGGGTGCTCTAGGCCAGTAGATGGTGTTCTAGGCTAGTGTTTAAGAGCAGAGGGTGCTCTAGGCTAGTGTATAAAAGGTTGACAGTGTTAAAAACTAGCCTAGAGTGCCATCTACTGTTAAAAAATAAGCTCAATTCGATTTAAGAGAGTCTCAGTGCATTTTGAAAATCTCAGAACTGATGCAGGATTGATTTCTCAGACATTTTTTCACCACAGCTCTAGAAAAAACTCGGCTACCAAAGATTGGGATGTTTTTAACTTTCCTGTGAAGCTCAAAACATCCATATTAATATTCTAAAAACGTGTTGTTGTTGTTGTTGTTGGTTAGGGAAACAGTATGGACATTTCACTGCTGAATATTCTGAACAAACACATTTCTCAAACTCTTAGTAGATATCTAGATTATCTACATTATTATACGGTTAAACAAAACACTTCCAACTGAGACCAGATAACTGTAAATGAGCATTGCTGGAAGAACGGTCGTTCATAACATTGAGAGAACATTGCCAGAATGTTCAGAGAATGTTTCCGGTTTGCTAGACTCTCACACAAAGCTGTTGCATAACTTGGCATGAAGCACCATTCGTCTATGGTCCATTTTTGTGCTTTCTGGAGCTCAAACAAGCCTCTTTTGCATCTAATACAGAACTTTCCAGAGTAAATGATGACTGAATACTTATTTCAGGTGACCTGTGCCTTTAAACAGTGCCTTTCTTCACTATTATTTACACAATATGTGCCTTGTTTATTTGGTTTTGTTTTAATTGTGATTATTTTAGAAACCATAGTCTCTTTTCAGAGCAGGACTATGAATTTGGGTTTTGTCAGTCAGAACCGAAGTACATTCGAATACCAAGTGGACCAGCGTATCTTGAAATACCAGGGTACAATCACAGTAAAATGCTAAATAAATAAACAGTCGGGAAGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058992:ENSDART00000149299:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.694
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCATACGCCTGGCCTTC
R:
TGCCTCAGGAGATGACGGATC
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]