HsaINT0090813 @ hg38
Intron Retention
Gene
ENSG00000143418 | CERS2
Description
ceramide synthase 2 [Source:HGNC Symbol;Acc:HGNC:14076]
Coordinates
chr1:150965173-150966629:-
Coord C1 exon
chr1:150966476-150966629
Coord A exon
chr1:150966289-150966475
Coord C2 exon
chr1:150965173-150966288
Length
187 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
TTCTTGTCCCTTTTCCACAGCTG
3' ss Score
10.83
Exon sequences
Seq C1 exon
GATCCTGCATTGCACCCTGGTGTACCCACTGGAGCTCTATCCTGCCTTCTTTGGCTATTACTTCTTCAATTCCATGATGGGAGTTCTACAGCTGCTGCATATCTTCTGGGCCTACCTCATTTTGCGCATGGCCCACAAGTTCATAACTGGAAAG
Seq A exon
GTGAAGCCCTGTTCCCATTGTGTAGGCCTTACTACTCTCTACAACTTCCTGAACTCCCATCTTGCCAGTAACTCTCTAAAAAACTAGTGTGGAGCCCTGGGTATAACAGGAACAAGCCCTCAGAGAGAAGCAGTACTTAGGGGTTTGAGGATCTCATGTAATAACCCTTCTTGTCCCTTTTCCACAG
Seq C2 exon
CTGGTAGAAGATGAACGCAGTGACCGGGAAGAAACAGAGAGCTCAGAGGGGGAGGAGGCTGCAGCTGGGGGAGGAGCAAAGAGCCGGCCCCTAGCCAATGGCCACCCCATCCTCAATAACAACCATCGTAAGAATGACTGAACCATTACTCCAGCTGCCTCCCAGATTAATGCATAAAGCCAAGGAACTACCCCGCTCCCTGCGCTATAGGGTCACTTTAAGCTCTGGGGAAAAAGGAGAAAGTGAGAGGAGAGTTCTCTGCATCCTCCCTCCTTGCTTGTCACCCAGTTGCCTTTAAACCAAATTCTAACCAGCCTATCCCCAGGTAGGGGGACGTTGGTTATATTCTGTTAGAGGGGGACGGTCGTATTTTCCTCCCTACCCGCCAAGTCATCCTTTCTACTGCTTTTGAGGCCCTCCCTCAGCTCTCTGTGGGTAGGGGTTACAATTCACATTCCTTATTCTGAGAATTTGGCCCCAGCTGTTTGCCTTTGACTCCCTGACCTCCAGAGCCAGGGTTGTGCCTTATTGTCCCATCTGTGGGCCTCATTCTGCCAAAGCTGGACCAAGGCTAACCTTTCTAAGCTCCCTAACTTGGGCCAGAAACCAAAGCTGAGCTTTTAACTTTCTCCCTCTATGACACAAATGAATTGAGGGTAGGAGGAGGGTGCACATAACCCTTACCCTACCTCTGCCAAAAAGTGGGGGCTGTACTGGGGACTGCTCGGATGATCTTTCTTAGTGCTACTTCTTTCAGCTGTCCCTGTAGCGACAGGTCTAAGATCTGACTGCCTCCTCCTTTCTCTGGCCTCTTCCCCCTTCCCTCTTCTCTTCAGCTAGGCTAGCTGGTTTGGAGTAGAATGGCAACTAATTCTAATTTTTATTTATTAAATATTTGGGGTTTTGGTTTTAAAGCCAGAATTACGGCTAGCACCTAGCATTTCAGCAGAGGGACCATTTTAGACCAAAATGTACTGTTAATGGGTTTTTTTTAAAAATTAAAAGATTAAATAAAAAATATTAAATAAAACATGGCAATAAGTGTCAGACTATTAGGAATTGAGAAGGGGGATCAACTAAATAAACGAAGAGAGTCTTTCTTATGCCTTCCTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143418:ENST00000368954:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.475
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGAGCTCTATCCTGCCT
R:
TATTGAGGATGGGGTGGCCAT
Band lengths:
246-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development