DreINT0046755 @ danRer10
Intron Retention
Gene
ENSDARG00000069660 | chrnb1
Description
cholinergic receptor, nicotinic, beta 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-070821-4]
Coordinates
chr7:22305588-22306730:+
Coord C1 exon
chr7:22305588-22305735
Coord A exon
chr7:22305736-22305889
Coord C2 exon
chr7:22305890-22306730
Length
154 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TCTTTTTTTCTGGCTCTCAGTTG
3' ss Score
8.86
Exon sequences
Seq C1 exon
ATACCAGCCTGACGGTCAGTGCACCGACCTGAGGAAGTTCATCGACGGCCCGAGTCATTACCTCACTCTTCCTCCAGAACTCAAGACTGCCGTGGAGGCCATCACTTACATCGCAGAGCAGCTCCAGGCCGAGAAAGATTATGAGGCT
Seq A exon
GTAAGTCATTTTTAGCCCAAATTGTCTGTAACATTTCCTGCTTTTGTATGTGTGTTCTTTAAATCTCCTCATTCCCTTTACTGTTTTCTATCACCTTCCTCCTTTTGTGTTTTGTTTTTCATCCTCTGTTCTTGTCTTTTTTTCTGGCTCTCAG
Seq C2 exon
TTGAAGGAGGACTGGCAGTATGTTGCTATGGTGGCCGACAGACTGTTCCTCTGGATTTTTGTGATTTTTACCACTCTTGGGACGCTGGGAATTTTTACTGATGCCAGCTTCAATGCCACACCAACTGACCCATTTCCCTAAGCGTTGTCTTGAACTTTTCACTTTAAAAACAGTGGCACATGTTGACATTTATGGTGTTTTAGTGTAAGAACAAGAGCACTAATTTATTCACAATATATTTCCTTTGTTAAGTCAATAGATATACCGTAGAAGTCAGATTTATTAGCACTCCTGTGAATTTTTTTCTTTTTCAAATATTTCCCAAACGAAGTTTAACAGAGCAAGATTTTTTTTTCTAGATAGTTTATTTGTTTGATTTTGGCTAGAATAAAATAAGTTTAAATATTAAAAATAAGGTCAATATTATTAGCTGTCTTAAGCAATATTTCTTTTTGTCTACAGAACAAACCATCATTATACTATGGTTTGCCTAATTACCCTAACTTGTCTAATTAACCTGATAAACTTAGTTAGGCGTTTAAATTGCACTTTAAGCTGAATACTAGTATCTTAACAAAATATTTAGTCGAATATTATGTACTGTCATCATGGCAAAAAAAGAAATCAGTTATTAGAAATGAGTTATTAAAAGTCTTATGTTAGAAATGTGTTGAAAAAAATCAATCTGTCTGTCAAACAGAAATTGGGGAAGTGAATATACAGGGCGACTATTAATTTTGACTTCATCTGTATGTATCATCCTTTTTACTGGAAGAAAATTTATAATTTATTGATTAGTCTCAGATTTCAAATTGTTCAGACTTTGCTTAAATATATTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069660:ENSDART00000101528:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(20.7=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=PD(13.1=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAAGTTCATCGACGGC
R:
GGTCAGTTGGTGTGGCATTGA
Band lengths:
250-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]