DreINT0046760 @ danRer10
Intron Retention
Gene
ENSDARG00000069660 | chrnb1
Description
cholinergic receptor, nicotinic, beta 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-070821-4]
Coordinates
chr7:22289032-22291781:+
Coord C1 exon
chr7:22289032-22289176
Coord A exon
chr7:22289177-22291595
Coord C2 exon
chr7:22291596-22291781
Length
2419 bp
Sequences
Splice sites
5' ss Seq
GCGGTAACA
5' ss Score
5.38
3' ss Seq
AAAATATTCTGTCATTTCAGAGA
3' ss Score
6.34
Exon sequences
Seq C1 exon
GTGACATACTTTCCTTTTGACTGGCAAAATTGTACCATGGTTTTCCGCTCCTATACATATGATTCTTCAGAAGTGGATCTTCAACATGCCCTGGATAAAAGGGGAAAGGAAATAAAAGAGATCATCTTGGACACAGGCTTTAGCG
Seq A exon
GTAACAGCATGATAACATTCTCTTACCAGTCTTAAACAATTTAATATACAATTTACACATTTTTTTCACCTTTTAGCATGTGTTTTGGGGATTTTTACCTTTTTAAAATTCCTTTAAATATATATTGTTTTACTTTTTCTAAATTGTAAAAAAAAAAACTAAATTGTATTGCTGTCATTTTGGTGCCCAAATTAAATTGACAAAAGTGTATTAAAGTAAAGTAAAATGTCTTAAAACAACTTTTGTGGGGGGGACTTGAAATTGGGGTACACACGTTTCATTAGCCTTGATTCCATCCAAAGATGCAATACAATTTATTAGCAAAACTGGAATGTCGAATAAAACATTTGCGAATAAAGCACCATTTCCAAACAAAATCGTCACTTCCTGATAAATTGGCAAAAGGTGTCAAATATCAAAAGAAAAATGGAAGTTGCTGCATTAGGAGAAGGCCTATTTTTGTATACATTTTTTGTAGAACGCATACTTGGCAAACTAAAGACTGCTGCAACTGAGTAAATCTATCTAACTGCACATCACATGTTAAATGAGCAAAACATCAATTATGACCATATTTGAGAAAGGTTGGGTTATTTGGTGAAAAAAAATCAGTCAGTATTGACTTGTATACTGTATTTACAAGTATGTTTATCACTTAATATCAGAGAAGATATGATAAATATTGCCATTTGTGATAATCCAGCAAAATTACTTAAGAGTGGACTTGGCAAAAAAAATTGAGCCACTTTTCAAAACTTTTGGGCAGATTTTGAATGGTCATTGGGATGGAAATTTTTCTTGGAAATTGCCTCTTTCTGATAAGTGAAAGCTTAAAAAGCAGACAACTGTTACAGCAGAGCCCACGAGCCCCTATTTCACTGCTCTGGAGATTAAATAAAAGCTCTGAACTCCCTCTCTGCTCTGTCAATGCATGTCATGGAATCAATATGAAAAATGTAACACAATCTTAATGTTAAGGTTTTATATATCTATTTATTAGGTTTTATAAATGATTTGTTAAATTGAATTTAAAATACTGTAGTTATTTTCTGAATTTGTCATATCAACTGACAACTTACTTGGCTTCAATAAGTATTTAAATGGTTTTGAATAAACAGAAGAATAGTGTAGCAAACTTTGTGATTATGCACTGTAATGAAATTCCAACACAAATCGATTAAGTTAACTTAACACTTTTAAAAAATGAACTGAACATAAAAAATTAAGTGGTCCCATAAAATCTCAAGAACTGGGCTGATTCAACTTATTTTAAATTAGTTAAAAATATATATATATTTTTGAGACTGCTTGGTCTTTCTTTGGTGCTGTTAAAACCCCCACATCAAACCTGGAGCTCTTTAATGAAATTATAATAAATCGTATTTTAAATCGCAATTCGATTTTTTTATTTTTTACTTTAAAAAAAAAAAATTTTTTTGGCAAATCATGCAGCCCTACTAAGAATTCTATCCATATCATCAAAGTAATGAAATGTGTTCTTGCCACCTGTTCTAATGCGTCTTAGTTTTATTTTTTTTTTCTGGCATGGATTTTTGCAAGGCTCTTCCATTTATTACGCAAAATAGTCCATGATTTGTCATTGCCTTTTAGAATCATCTCCACTTGAACTTCTTGAATGATTTGCATGTTCCACTGATATTTTTCATTAAGGACGATCGTCACTTCTTTTTCGTACAAAACATTTAAAAATGTTCGGACCTCATAATTTTTGGGTAAATAAACTATTGATACAATAAATGACATTTTATTTTATGTGGAGTAAAACAAAAAAGTTGAAGTAAAATTAAAGAAAAAATTTATCTTTTTCAAAAACTAAAAACTATTTATTGTAACTGAAGGAGGCTTTCATGGAGGCATAAATCTAAATGCAGATTTTTTTTACGATGATTGTAAATCAGGCAAGGGTCAACAACAGGATCAACTGGGTACATATAGATAATCCAGAAGTGGTCGTCGATAAAAAGTCAAAAATGGATAAAGGTAAGATAAATTAGGAACAAGTCTAGGATTAGATAACAAAATATTAAAATCAAAGAACATGGTTATCAGGGGAATGAAAATGCTATAGGTGTATAAATAGTCTATGTAATGAGTCCTTGAGCAGCTTCAGCTGTGAGTGTTTGCAATCAGACAAGATTAGGAACTGGTGTGTGTGTGTGCGGTGCATGCTGTGATTTGTAGTCCATTTGGTGGCAGACTTGTAGTTCTCCAGCGATCTGCAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAACTAAAATCCCCCACTGAGCTAGACTAGTTGAATGCACAATATCTTTGTTTAAACACTATGATGTATCCACCGAAAAAAATATTCTGTCATTTCAG
Seq C2 exon
AGAGTGGAGAATGGCACATTCGTCACAAAGTTTCTAGAAAGAATGTTCGAGAGGATCTGTATGAGGACATCACCTTCTACCTGATCATTGAGAGGAAGCCCATGTTTTATGTTGTTAACATCGTCCTACCCTGTATCCTGATCACCATCATTGCCATCTTTAATTTCTACTTGCCACCCGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069660:ENSDART00000101528:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(22.9=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=PD(15.7=52.4),PF0293211=Neur_chan_memb=PU(9.3=34.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]