DreINT0047527 @ danRer10
Intron Retention
Gene
ENSDARG00000103340 | clic1
Description
chloride intracellular channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3202]
Coordinates
chr19:17472106-17474443:+
Coord C1 exon
chr19:17472106-17472231
Coord A exon
chr19:17472232-17474336
Coord C2 exon
chr19:17474337-17474443
Length
2105 bp
Sequences
Splice sites
5' ss Seq
TAAGTAACT
5' ss Score
1.43
3' ss Seq
GCTACAATTTATTCCTCCAGATA
3' ss Score
6.92
Exon sequences
Seq C1 exon
GAAACCAGAAATTCTAAAAGATCTGGCCCCTGGTGCTCAGCCTCCTTTCTTGCTATATGGTACAGAGGTGAAGACAGACACCAACAAAATAGAAGAGTTCTTGGAAGAAACACTCTGTCCTCCTAA
Seq A exon
GTAACTTACTTCATTATTGCATGCTTCATTTCCTTTCATTGTGTTGCTAGATATCATCACTGTGCTTGTATTTGTATACTTATTATAACTGTATGGATACAAATCCTGATGTTGAACTTGTAATCATACTGTAACATGTATTTAAGTGTTTTTTCTTAAATGTGGGTAAAGTAATTATGAAATCAGAATACAAATACAAATTACAGTATGTAATTTTCAATCTTTAATTTTATAAATCAGGGATGTCAAACACAGATCACGAAGGGCCACAGCTCTACACAGTTTAGTTCCATTCCTGTTTCAACACACTTGCCTGTAGGTTTCAAACAAGCCTGAAGGACTCAATAAGTATGATCAATTGTGTTTGATTAGATTTGGAACTAAACTGTGCGGAGCTGCAGCCCTCCAGGAACTAAGTTTGGCACCACTGGTATGAAGCCATTTTGTCTATCAGAAGAATTAAATTTTGATTGGCCCTCAGTCTTCATTAGAACAGAAATGGTTTGATAAACTAAAAGTTGCTCATGTTAGTCACTCTGTTTTTCCAAATCCTGAAGTTCACTTAATCTTGGATCTGGCCTGTATTAAGACTAGGTAGTTTTTGTGGTCATTGATGAGTCTTGAACACCTTGATTATTTGGATCAGCTGTGTTTGATTAGGGTTGGAGCAAAACTGCAGAGCTGCGGTCCTCCAGGAATTGACTTTGACACATACACATAAGGACACATGAAATGTGGCCTTCAAATGACCGGTTGCTATAAAATATTATTTTTACAGACGACAAGGACTTAAGCAAACGTCCAGCAAGGCTTATTCAGTAAGGGCAGAATTCTAGGTTTTTGCACAAGAGGTTTTTTTTTTTTGGTACAATAAACAAAATACCTCAATTTTATTTATATATATATAAAGTTATCAGTCATCCATCCATCCTTAGTTTTGTGAATTCATACAAATTATCAGGTTGTAAAGATATAGAGAATTAACAATGGAAACTATTACCATGTTTCTTAATAATATTGCTACATACTATATATAGATATTTTAGATGTAGCACATTGATGGGGAGTGATGGGGATGGGATTGATCATCACTGAAGATGAGTGATCACTGATCATTGTGAGATGACCAAAGATGCAGGGCTGTTGAGAATAAATGGCTTATTTTCATAACAATACCACAGTATAGCCAAGCCAACTTTGCTTTGTTTGTTCCTGTCATGTTTTTGATGATTAATACAGTAACCTATGCTGCAATGTGGGATTTCTTGGCCAATTGTAATTAAAAGAAGGATCAGAACCAAAGACTGTTAGGACCAATTCCCATGATATTTTTAGCCCTACTTTCCCCCTTCCGCTTGGCCCTTGAAACAGAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATGTATGTATGTGTGTGTGTGTGTGTATATATATATACATTTATTTATATATACATATATTTATATATTTATATATATTTATATATATTTATATATATAGTTTTGTGGTCCCACTTTATATTAAGTGGCCTTAACTTATATGTACTTACACAGGAATTAATAGTTTGTTACAATGTACTTAATGTGTAAATACATGTATTTACTGTGTACTTATGCTTGATTAAATACATGTATGTAATTACATCTTTAGTTAACTTTTGTAATTACATTTGTAAATACACTGTTGACCATCCCTTACACCTTAACCCACCCTTAAACCTACCCATGCCACCAAACCTGTCCATAACCCAACCTCTTTCCCAACTCAAAAGCACCACAAGTGTTCTCAAATACATTATAAACACAGTAAGTACATTGTATTTATTGTATTTATTTTTTTTATGTAAGTACATAGTAGTTAAGGACACTTAATATAAAGTGGGACCAGTTTTGTCTCTTTTGTCTCTTATGAAATGGGAAGACCAAACTGTTATGTTTAATATATCTATCTCTTTTGCTACAATTTATTCCTCCAG
Seq C2 exon
ATATCCACGGCTGGCAGCTTGCAATCCTGAATCTAACACTGCAGGTCTTGATGTGTTCTCTAAGTTCTCAGCCTACATTAAAAATTCAAACCCTCAGATGAACGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103340:ENSDART00000158935:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(56.9=95.3)
A:
NA
C2:
PF134101=GST_C_2=PU(5.6=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]