HsaINT1007844 @ hg38
Intron Retention
Gene
ENSG00000213719 | CLIC1
Description
chloride intracellular channel 1 [Source:HGNC Symbol;Acc:HGNC:2062]
Coordinates
chr6:31733566-31733961:-
Coord C1 exon
chr6:31733836-31733961
Coord A exon
chr6:31733673-31733835
Coord C2 exon
chr6:31733566-31733672
Length
163 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
TTTTTCCCATTGGCTTTCAGGTA
3' ss Score
11.18
Exon sequences
Seq C1 exon
GCGGACCGAGACAGTGCAGAAGCTGTGCCCAGGGGGGCAGCTCCCATTCCTGCTGTATGGCACTGAAGTGCACACAGACACCAACAAGATTGAGGAATTTCTGGAGGCAGTGCTGTGCCCTCCCAG
Seq A exon
GTATAGGGGCACTCAGAAAGTGGAGAGGTGGAGCAGGGAGATTCTGGGAAACAGACAGTTTGCAGAAATGGAAAACAGAGATGGTGGTGGGGCTGGGGCAGGAGAGCTAGCTGAGGTTCCTCCCAGGAAGACATCTTACCTCATTTTTCCCATTGGCTTTCAG
Seq C2 exon
GTACCCCAAGCTGGCAGCTCTGAACCCTGAGTCCAACACAGCTGGGCTGGACATATTTGCCAAATTTTCTGCCTACATCAAGAATTCAAACCCAGCACTCAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213719:ENST00000375784:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(57.7=95.3)
A:
NA
C2:
PF134101=GST_C_2=PU(6.6=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACAGTGCAGAAGCTGTG
R:
TGTCATTGAGTGCTGGGTTTGA
Band lengths:
227-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains