DreINT0047615 @ danRer10
Intron Retention
Gene
ENSDARG00000059870 | clk2b
Description
CDC-like kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-1126]
Coordinates
chr16:54659058-54660017:-
Coord C1 exon
chr16:54659935-54660017
Coord A exon
chr16:54659103-54659934
Coord C2 exon
chr16:54659058-54659102
Length
832 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGTGTGTGTGTGTCTGTTAGACT
3' ss Score
7.69
Exon sequences
Seq C1 exon
AGCTGGGCTGGAGTCAGCCGTGTGACGTCTGGAGTATCGGCTGTATACTGTTTGAGTTCTACTGCGGATACACACTCTACCAG
Seq A exon
GTGTGTGTTTATGTGCATGCGTGTGTGTGTGTGTGTGTGCGCGCGCATGCGCGTGTATGTATGTGTGTGTGTGTGTGTATGCGTGCGTGTGTGTCCATGCGTGTGTCTGTGTTCTGTTTGAGTTCGACTATGGATACACACTCTACCACAGGTGTGTTTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGCGCGTGTGCGCGTGTGCGCGTGTGCGCGTGTGCGCGTGTGCGCGTGTGTGCGTGTGTGCGTGTGTGTGTGTGTGCTCTGTTTAATTTCTGATGGGGATACACACTCTACCAGGTGTGTGTCTATATTTGTGTGTCTGCGTGTTTGTGTTAGTGTGTGTTTTCTGTTTGAATTCTAATGAGAATACACACACTTCCAGGTGTTTATATGTGTGTGTGTGTGTGTTTGTGTCTGTAAGTGTGTGTCTGTAAGTGTGTGTGTGTGTTGTATTTGAGTTCTAATGAGGTTACACACTCTAACAGATGTGTGTTTATGTGCGTGCGTGCGTGCGTGTTCTGTTTGAGTTCTACTGTTGATACACACTCTACTAGGTGTATGTTTATGTGTGTGTGCGTGTGATGTGTGTGTGTGTTCTGTTTGCATTCTAATATGGATACACACTCTATCAGGTGTTTATGAGTGTGTGTGTGTGTGATGTGTGTGCTTTTGCATTCTAATATGGATACACACTCTCCCAGGTGTGTGTGTGTTCTGTTTGAGTTTTACTCTGGATACTCGTTAGTGCATCTGTAATCCATATGTTTCTGTCATACGTGTGTGTGTGTGTCTGTTAG
Seq C2 exon
ACTCATGACAACAGAGAGCATCTGGCCATGATGGAGCGAATACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059870:ENSDART00000083713:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]