HsaINT0036433 @ hg38
Intron Retention
Gene
ENSG00000176444 | CLK2
Description
CDC like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr1:155264221-155264550:-
Coord C1 exon
chr1:155264468-155264550
Coord A exon
chr1:155264301-155264467
Coord C2 exon
chr1:155264221-155264300
Length
167 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTTCTGTTTTTGTTTCCCAGACC
3' ss Score
9.76
Exon sequences
Seq C1 exon
AGTTGGGCTGGTCACAGCCTTGTGATGTGTGGAGTATAGGCTGCATCATCTTTGAATACTATGTGGGATTCACCCTCTTCCAG
Seq A exon
GTAAGTGATGGGATGTCTTACTTGACTGCCTGGCATTCTTCTACCTGGTTCCTTTGTTTTCTGCTGAGGACCTGCCTACTCAGTTCTCCACATTGCCTGCCTTCCTGGCAGCTGATCCTTAGCATGCCCTTTTCAGTCCCATGCTCAGTTCTGTTTTTGTTTCCCAG
Seq C2 exon
ACCCATGACAACAGAGAGCATCTAGCCATGATGGAAAGGATCTTGGGTCCTATCCCTTCCCGGATGATCCGAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176444:ENST00000368361:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTTGTGATGTGTGGAG
R:
ATCATCCGGGAAGGGATAGGAC
Band lengths:
138-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development