HsaEX1009000 @ hg38
Exon Skipping
Gene
ENSG00000176444 | CLK2
Description
CDC like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr1:155263950-155264550:-
Coord C1 exon
chr1:155264468-155264550
Coord A exon
chr1:155264221-155264300
Coord C2 exon
chr1:155263950-155264040
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTTTTTGTTTCCCAGACC
3' ss Score
9.76
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
AGTTGGGCTGGTCACAGCCTTGTGATGTGTGGAGTATAGGCTGCATCATCTTTGAATACTATGTGGGATTCACCCTCTTCCAG
Seq A exon
ACCCATGACAACAGAGAGCATCTAGCCATGATGGAAAGGATCTTGGGTCCTATCCCTTCCCGGATGATCCGAAAGACAAG
Seq C2 exon
AAAGCAGAAATATTTTTACCGGGGTCGCCTGGATTGGGATGAGAACACATCAGCTGGGCGCTATGTTCGTGAGAACTGCAAACCGCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176444_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.5=100)
A:
PF0006920=Pkinase=FE(8.2=100)
C2:
PF0006920=Pkinase=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTGTGATGTGTGGAGT
R:
GCGGTTTGCAGTTCTCACGAA
Band lengths:
155-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains