RnoEX6010272 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188487089-188487664:+
Coord C1 exon
chr2:188487089-188487171
Coord A exon
chr2:188487315-188487394
Coord C2 exon
chr2:188487574-188487664
Length
80 bp
Sequences
Splice sites
3' ss Seq
GCTCTGTCTTTGTTTCTCAGACC
3' ss Score
9.53
5' ss Seq
AAGGTGACG
5' ss Score
7
Exon sequences
Seq C1 exon
AGTTGGGCTGGTCACAGCCGTGCGACGTGTGGAGCATAGGCTGTATCATCTTCGAGTACTACGTCGGCTTCACCCTCTTCCAG
Seq A exon
ACCCATGACAACAGAGAGCATCTAGCCATGATGGAAAGGATCCTGGGTCCTGTCCCCTCTCGGATGATCAGAAAGACAAG
Seq C2 exon
AAAACAGAAATATTTTTATCGGGGTCGCCTGGATTGGGATGAGAACACCTCAGCTGGGCGCTACGTCCGTGAGAACTGCAAACCACTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.032
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.5=100)
A:
PF0006920=Pkinase=FE(8.2=100)
C2:
PF0006920=Pkinase=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCACAGCCGTGCGA
R:
CCGTAGTGGTTTGCAGTTCTCA
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]