DreEX0022148 @ danRer10
Exon Skipping
Gene
ENSDARG00000062954 | clk2a
Description
CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]
Coordinates
chr19:9246079-9248198:+
Coord C1 exon
chr19:9246079-9246161
Coord A exon
chr19:9247387-9247466
Coord C2 exon
chr19:9248108-9248198
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTTCTGTTTCACAGACT
3' ss Score
9.47
5' ss Seq
TAGGTGCAT
5' ss Score
0.81
Exon sequences
Seq C1 exon
AACTGGGTTGGAGTCAGCCGTGTGACGTATGGAGTATTGGCTCCATCCTCTTCGAGTACTACCTCGGCTTCACCCTCTTCCAG
Seq A exon
ACTCATGATAATCGGGAGCATTTAGCTATGATGGAGAGAATTCTGGGCCCTGTTCCTTCCCGGATGATTCGGAAAACTAG
Seq C2 exon
GAAACAGAAGTACTTTTATCGTGGACGCCTGGACTGGGATGAGAACTCTTCAGCAGGAAGATACGTCAGAGAAAACTGCAAACCTTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062954_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.5=100)
A:
PF0006920=Pkinase=FE(8.2=100)
C2:
PF0006920=Pkinase=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGGTTGGAGTCAGCCG
R:
AGGTTTGCAGTTTTCTCTGACGT
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]