DreINT0051657 @ danRer10
Intron Retention
Gene
ENSDARG00000098158 | cpxm1b
Description
carboxypeptidase X (M14 family), member 1b [Source:ZFIN;Acc:ZDB-GENE-141212-305]
Coordinates
chr14:51609310-51612689:+
Coord C1 exon
chr14:51609310-51609990
Coord A exon
chr14:51609991-51612579
Coord C2 exon
chr14:51612580-51612689
Length
2589 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
GTCTTCTCTCTGCTCCTCAGAGT
3' ss Score
9.39
Exon sequences
Seq C1 exon
GTGTAAAAACGCTGACCATCAAACCCACTGAAACGTCATCCAGAGCTCTGAAACCCACAGGAAAAACCCCCAAACCCACCGAAACCAGCAGAAATACTCCTCAACCTACTGAAACCAGCAGAAAACCTCCCAAACCCACTAAAACCAGCAGAAAACCTCCCAAACCCACTAAAACCAGCAGAAAAACTCCCAAACCCACTAAAACCAGCGGAAAACCCCCCAAACCCACTGAAACCTCAACCAGAGCTCTAAAACCCGCAGGAAAACCCCCCAAACTGACTGAAACCAGCAGAAATACTCTGAAACCAACTGAAGCCAGCAGAAAAACCCCTAAATCTAAAGCCTCCTCCAGAGCTCTAAAACCCACAGGGAACCCTCCCATACCCACTGAAACCAGAAGAAAAACCCCCAAACCCACTGAAACCTTCTCCAGAGCTCTGAAACCCACAGGAAACCCTTTCAAACCCACTGAAGCCAGTATAAAACCCCTTAAACCGACTGAAACCAGCGGAAAAACTTCCAAACCCTCTGAAACTAGCAGATCCACAGTCTCCCCTTCATCCAAACCCCCCAGAACATCCACAGTGAGCTTCAGCACAGAGGACCTGAGTGAAAGCATCGACAAAACAGTGGAGAAGAGAGTCTGGAGCAGCAGAGAGAGCACAGAACCACCGGTGTTTG
Seq A exon
GTGAGGAGAAATCTCTTTAAAGTAGCGCTGCATCCGCTAATCTATTTACTAACATGAACAATCACATACACATATATCATATCCAGCATTCTTCAAAATATCTTCCTTTCTGTTCGACAGAATAAAAGCAAGTCACACATGTTTAAAAGTAATTGCTGAATAAACTGGGTGAACTATCCCTTTAATATAAATGAAAACATGCACGCAGTTATTTATGATCTCTTTACAATAACTCAGCTCATGAACATGCATGTTACGTAATTCAGATTCCTCTTCCTGATCTAAAAGCCAACTGGGTCATCGGGGAAGAGTTTCTCCACTAAACACACAAACCACAGAAGCTGAAGCTGGATTTTCCATTGATTAAATACTGCAGGAATGCTGTGGTCAGAGTAACGGGCCACTCTCACATCTTATATCAAGCTGACGGAAATAAAGACATCTGCAGAACTGATCAAGCTGCAGCTGAAGAACAAAAACACTTATAATCAGGCGGCAAGAAGGTCTCTGGTTTAAGTCCAGACTGGGACAGTTGGTGTTTCTATGTGAAGTTTGCATGTTCTCCCCGTGTTGGCGTGGGTTTCCCCCACAGTCCAAACACATGCGCTATAGGGGAATTGATCAACTAAACTGGCCGTAGCGTAAGAGTGTGTGTGTGAATGAGTGTGCATGGGTGTTTCCCAGTATTGGGTTGCAGTTAGATTGGCATCCACTGTGTAAAACATATGCTAGAATAGTTGGTGGTTCATTCCACTGTGGAGACCCCTGATTAATAAAGGGACTAAGCTGACGGAGAATGAATGAATCAATCAATGAAACTCCACAAACGAGAGAACTGATGTTCGGTGTGCAACACAGCAGGATTGCCATGTGATTTTCTCAGGGGTTGTGCAACAAACACAATCACAACCTCATGGCACACCTCATAAAGACGAGCCCAGCGGCAGGAGTTAATCCAGATGTCTGAACATGAACTGGAAAATCAGGCCTCGCTCAGATGAATAACTGGGAAATGCTGACAGAGCAGAGCATCAGCCTGAGTCAGATCAACCAGAGCCTGAGCACTTCCACAGGACTTCAGGAGAGGAAGATTTAACCCTCGTGTCAGACTGACTCCCCTTTGGTTATGCTGGTGCTGTTTTTGCCCCATTGATTTCCATCATAATCACAGTTTTATTAGAAGTTTTTAAAACCATTATTAATTGTACCTAATTAAACCAGCAGCAGTCAGTACTGCATGATTATCTGCTGTAATGGCTTTACATCCAATAAATGTGATTACAATGGAAGTCAATGGAGCAAAAACAGCACCAACATCACCAAAGGGGAGAGTGTGTTGATGAGTTTATGAACATTTCCAAAGTATTTTCTGAAAATATGTGTCAAAATAAGATTTGTCAGAAAAACTTACTGATAACAGAGAAAGATGAGGTCTCAAAATCAGCCCGGAGTGCATGAAAACAACCCAACAGCACACAAGAGTTGAAGTCTTTTTGTGACACAATCTGTATTCGATGCATCCTTAATATCAGGAATGCATCCGGGTTCTGTCATGAGCCCTCTGTTCTTGTGGTTTTATTCATTGGAACTGATTTTGGTTGCTGATTATGATAACGATAATGTTACACGAGAACAGAAGATCGCATGAGAACACACTGAGAAACAGCCACTGTGTTTTGCCCAAATATATGTATATTTTTAAATTGATCAGTGTTTAAACATGAGATTTGAACTCTTTAAAGGTCCCATCAAATTAAAATAGAGTTGCTTTAGATGTTAGTATCAGTCTGTCAGTTTTTAGGATATCTATAAGCCAGTGTGCTCCGAAACAGTGACAAAATTTGCATTTGTAATGTGTAGTTTGTCACTTCCACCTTAATGGATCAGTTTTTTTCACACCACCTAATATTTGAGCTTCACATTAAATCTTCTGACCAATCAAATGCTCTCTAGTATCTGATATGCCCCGCCTCCTCCTCCTCCTCATTGGATGCACATGATCACTGGCAGAGCTGTGAAAAAATAATACTATTGGCTGTTTTTGTAAAAGGGGAGGGGCGACGTGGTGGTGCAGTGGGCAAGAAGGTCGCTGGTTCGAGAATTGGCTGGGTCAGTTGACATTTCTGTGTGGAGTTTGCATGTTCTCCCCGTGTTGGCGTGGGTTTCCTCAGGGTGCGCCGGTTTCCCCCACAGTCCAAACACATGCGCTATAGGGGAACTGATCAACTAAACTGGCCATAGTGTATGAGTGAGTGTGTGAATGAGTGTGTATGGGTGTTTCCCAGTGATGGGTTGCAGCTGGATAGGCATCTGCTGCGTAAAACATATGCTTGATAAGTTGGTGGTTCAATCCGCTGTGGCAACCCCAGAATAATAAATGGACTAAGCCAAAAATGAATGAATGAATGTAAAAGGGGAGGAGCTACACTATGCCCCGCCCTCTCTTCATGTTTCAGTTGAGATTACATCAAACATCCAATAAAAATGCACAGTTTAAAGCATTTCACGAGACCTTTAATCAGGTAAATAACCCTGTATGCATGAAATAGCATTGGAGCACCCCTTTACAGTCTTCTCTCTGCTCCTCAG
Seq C2 exon
AGTGTCCTCCTTTGGGTTTGGAGTCTCTGAAAGTCAAAGACTCGCAGATTCAGGCGTCTTCATACCTGCGCCGGGGCCTGGGGCCGCACAGGGGCCGACTCAACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098158:ENSDART00000161245:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=NA C2=0.243
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0075420=F5_F8_type_C=PU(14.9=56.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]