MmuINT0041926 @ mm10
Intron Retention
Gene
ENSMUSG00000027408 | Cpxm1
Description
carboxypeptidase X 1 (M14 family) [Source:MGI Symbol;Acc:MGI:1934569]
Coordinates
chr2:130396108-130396492:-
Coord C1 exon
chr2:130396331-130396492
Coord A exon
chr2:130396218-130396330
Coord C2 exon
chr2:130396108-130396217
Length
113 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
CTGTTCTATCCTTACCCCAGGAT
3' ss Score
8.84
Exon sequences
Seq C1 exon
AGACCTCAGAACGGCATGTCCGGCTTCGAGTCATCAAGAAAAAAAAGATCGTTGTCAAGAAGCGAAAGAAGCTAAGGCACCCTGGTCCCTTGGGGACTGCTAGGCCTGTGGTGCCCACTCACCCAGCAAAGACCCTCACTCTCCCTGAGAAACAAGAACCAG
Seq A exon
GTATTGCTTACCCAGGGGCCCCGCCTAGCCTATGAACAAGCTTAGGCTCCGTTCTCGAGCCTCTCTGGTTACCCTCTATCTAATCCTGTCTCACTGTTCTATCCTTACCCCAG
Seq C2 exon
GATGTCCCCCTCTAGGCTTGGAGTCCTTGAGGGTTTCAGATAGCCAGCTGGAGGCCTCCAGCAGCCAGTCCTTTGGTCTTGGAGCACACCGAGGACGGCTCAATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027408:ENSMUST00000028897:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=0.486
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0075420=F5_F8_type_C=PU(14.8=56.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGGCTTCGAGTCATCAAG
R:
CTGGATATTGAGCCGTCCTCG
Band lengths:
255-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types