DreINT0051658 @ danRer10
Intron Retention
Gene
ENSDARG00000098158 | cpxm1b
Description
carboxypeptidase X (M14 family), member 1b [Source:ZFIN;Acc:ZDB-GENE-141212-305]
Coordinates
chr14:51612580-51613079:+
Coord C1 exon
chr14:51612580-51612689
Coord A exon
chr14:51612690-51612939
Coord C2 exon
chr14:51612940-51613079
Length
250 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
GACCGTGTTTGTTTCTGCAGTCT
3' ss Score
8.41
Exon sequences
Seq C1 exon
AGTGTCCTCCTTTGGGTTTGGAGTCTCTGAAAGTCAAAGACTCGCAGATTCAGGCGTCTTCATACCTGCGCCGGGGCCTGGGGCCGCACAGGGGCCGACTCAACATACAG
Seq A exon
GTGATGCACACAGCTTATAAAGCCTTTATTCATCAGGGGTCTCCACCGTGGAATGAACCACCAACTATTCTAGCATATGTTTTAAACAGCGGATGCTTTTCCAGCTGCAACCCAGTACTGGAAAACACACAATTTGACTGATCAACTAAATGCAGCTTTAAAAAATCTCATTAATCAATATCAGCAATATAGTATCATAATCATGGTTATATTAGTTGTCATATGATCATGACCGTGTTTGTTTCTGCAG
Seq C2 exon
TCTGGTGTGGAGGATGGAGATATCTATGACGGAGGCTGGTGTGCGCAGTATGAAGACCAGCAACAGTGGCTGCAGATCCATGCCCAGAAACTGACTCGGTTCACAGCTGTCATTCTGCAGGGACGCAGCTCTATATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098158:ENSDART00000161245:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(14.9=56.8)
A:
NA
C2:
PF0075420=F5_F8_type_C=FE(32.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCTCCTTTGGGTTTGGA
R:
ATATAGAGCTGCGTCCCTGCA
Band lengths:
245-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]