MmuINT0041927 @ mm10
Intron Retention
Gene
ENSMUSG00000027408 | Cpxm1
Description
carboxypeptidase X 1 (M14 family) [Source:MGI Symbol;Acc:MGI:1934569]
Coordinates
chr2:130395829-130396217:-
Coord C1 exon
chr2:130396108-130396217
Coord A exon
chr2:130395969-130396107
Coord C2 exon
chr2:130395829-130395968
Length
139 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CCGTGACCTTGTGTCCACAGTCA
3' ss Score
8.36
Exon sequences
Seq C1 exon
GATGTCCCCCTCTAGGCTTGGAGTCCTTGAGGGTTTCAGATAGCCAGCTGGAGGCCTCCAGCAGCCAGTCCTTTGGTCTTGGAGCACACCGAGGACGGCTCAATATCCAG
Seq A exon
GTCAGTGGCCCTTGCTCAGCCAGGTCTGAGGGAGGCGTAGGAAGCACAGCCTTAGGACCATCTCCTTGTCTCCCCCCCCCCCCCCTTGCTCGTCTTTGTGGCCTACCTGGGCTTGATCACCGTGACCTTGTGTCCACAG
Seq C2 exon
TCAGGTCTGGAGGACGGTGACCTGTATGATGGCGCTTGGTGCGCTGAGCAACAAGACACTGAACCTTGGCTTCAGGTGGATGCAAAGAATCCCGTCCGCTTCGCAGGAATTGTTACACAGGGCAGAAACTCTGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027408:ENSMUST00000028897:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(14.8=56.8)
A:
NA
C2:
PF0075420=F5_F8_type_C=FE(32.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCCCCCTCTAGGCTTGG
R:
CAGAGTTTCTGCCCTGTGTAACA
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types