DreINT0051659 @ danRer10
Intron Retention
Gene
ENSDARG00000098158 | cpxm1b
Description
carboxypeptidase X (M14 family), member 1b [Source:ZFIN;Acc:ZDB-GENE-141212-305]
Coordinates
chr14:51612940-51615937:+
Coord C1 exon
chr14:51612940-51613079
Coord A exon
chr14:51613080-51615852
Coord C2 exon
chr14:51615853-51615937
Length
2773 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTA
5' ss Score
6.36
3' ss Seq
GTGTGACTTATATTCTGTAGCTT
3' ss Score
5.75
Exon sequences
Seq C1 exon
TCTGGTGTGGAGGATGGAGATATCTATGACGGAGGCTGGTGTGCGCAGTATGAAGACCAGCAACAGTGGCTGCAGATCCATGCCCAGAAACTGACTCGGTTCACAGCTGTCATTCTGCAGGGACGCAGCTCTATATGGAG
Seq A exon
GTACTACCGTTCACTATACACTAACACTCAGTGTAACCGAGGATGTGACGCTGACAACGTGGGTGAGGATCCAAATGCAGGTTTACAAGAATGGTCAGGCAAGCAATGATCAACACAGGACCAAACAGATGTATAAGGCAGATAAGAAATGTAGTCACAGGAACAGGCGAGGGCAGCAGCAGACAGGGCTAAACAGATTCACAAGGGGGGATCAAAATACGGCAAAGCAAGACAAAGGAAACACGTTGTAATGTCACGATAACAGAAAACAAGACTCAGCACATGTGTGTGTTTGAGAGGTGTGTATATAGTCTGTGTAATCAGTCCAAAAGCAGCTTCAGCTGTGAGTGTCTAATCAATGGTGACTTGGAGCAGGTGAGTTTGTGTGTTGCATGACTGGGATCTGTAGTCTGTAATGTGTGTTTACCTGCAATTTGCACAGGCTGTATCGCTGGTGATCATGACATTCAGACGCTTTAGAACAATTGTGCATTACATGTTTTCTAAAAAGCCAATTATATATTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTCTCACCAAGTCTGTATTTATTGCATTTTCTGTATTTATTTAATGACTTAAAGTACAGCAAAATCTGAACTTTTACTATATAAAATAATAATTGTTTACTATTTGAAGATATTAAAATGTGATATATTCCCACATGTGATATAAGCCACAGCCTTATCACCCTGCAGCCCAAGACCGGTTACTCACTAAAGCTAAGCAGGGCTGAGCCTGGTCAGTACCTGGATGGGAGAACACTAGGGAACACTAGGTTGCTGTTGGAAGTGGTGTTAGTGAGGCCAGCAGGGGGCGCTCAACCTGAGGTCTAAGTGAGTCCTAATGCCCCAGTAAAAGTGAAGGGGACACTACACTGTCAGTGGGCGCCGTCTTTCGGATGAGACGTTAAACCGAGGTCCTGACTCTCTGTGGTCATTAATAATCCCATGGCACTTCTCGTGAAAGAGCAGGGGTGTAACCCCGGTGTCCTGGCCAAAGTCCCTCTATCGGCCCATACGATCATGGCCTCCCAATCATCCCCATCCACTGAATTGGCTCTATCACTGTCTCTCCACTCCACCAATAGCTGGTGTGTGGTGAGCGCACTGGCGCCGTTGTCCTGTGGCAGCCGTCGCATCATCCAAGTGGATGCTGCACACTGGTGGTGGTGTGGAGAGACCCCCCCTCATGATTGTGAAGCGCTTTGGGTGTATGGCCATACACAATAAATGCGCTATATAAATACACATTACATTACATTACATATATGAATATACTGCAATCACACATACATTTTAGAGCAGTCAAAATTTTAATGTTTTGTAAAGAGCATTTTTAAAGTCTCAACAAATCTTGATTGTTTAATTTTTATTATTATTAATATTATTATTATTAATTTTCTGCATCATTAATTCAGTCTTTAGATTTCATGATCCTTCAGAAATCAGTATAATACTCTATAATGTTTTTAAGAATGTTTAAAAAACATGCAGCAGAATTTAAAATATTTTTACTATTTAAAATTAATATTTGAATATATATTCATTCATTCCCTTTCAATCAACTTATTCCCTTTATCAATCAGGGGTTACCACAGCGGAATGAACCACCAACTATTCCAGCATACTGTATGTTTTACACAGCAGATGCACTTCCAGCTGAAACTCAGTACTGAAAAACACCCATACATATACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAAGGCCAGTGTAGTTGATCAGTTCCCCTATAGCGCATGTGTTTGGACTGTGGGGGAAACCGGAGCGCCCGGAGGAAACCCACACCAACACGGGGAGAACATGCAAACTCCACACAGAAACACCAACTGACCCAGCCGGGACTCGAACCAGCAACTGGAGTGCTACCCACTGCGCCACCCAATTTGAATATATATTTAAAATGTAATGTAATCCTTTGATTTCAAAGCTGAATTATTTTTGCATTATTACTCCAGTCACATGATCTTCATTCTAATATTCAGCTTTGCAGCTCGAATATCATTTTATTATTGGTATTAGCATTAATAGTATTATTATTGTGCAGCAAGCAGCTTTCTTTGATGAATAAAAGATTCTGTAGAATAGCATTTATCTGAAATAGAAGTCTTTAGTGACATTATAAATGTCTTTATCGTCACTATTAAACAGTTTAAAGTGTCTTTACTAAGTAAAAGTATTCGTTTCTAGAATTTCTTGACCATTTTTTAAACAACAAGCCTTTGAATCAGAATCAGAAAGAGCTTTATTGCCAGGTATGTACGAGGAGTTTTGGTGACAGAGCTTCTACAGTGCAACAGAATTACAGAGACAGGACAATAAACAGATAATAAATATATTTAAAAAATAGAAGTAAGTGCTGAATGCAAATATACAAATAGACAAGTGTATGTACAGCTATATTACAGTATACACCGGTATATGTGCAGCTGTTATGTGCAAATTAGCATGTAAAGTAAGTTGTTAATTTAGTGTATAAAAGTGTGTTTTGAATGGTTTGGTGTTTTATGAAATTTTATTTATGTATGAAATGGTGAGCAGAATATATTTGTTTTCAGTGTATTTGAAATCTAATAAAGACGTAATCAATAAAAATAGTGCATTTCAGCATTTACAGTGTGTGACTTATATTCTGTAG
Seq C2 exon
CTTGGACTATGTGGAAAGCTTCAAGGTTCAGGTCAGCAATGACACCATCAAATGGAAGCCGTGCATGAACGGGACACAAGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098158:ENSDART00000161245:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(32.6=100)
A:
NA
C2:
PF0075420=F5_F8_type_C=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]